Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g236 ATGGCACTTGAAGCTGTGGTCTTTCAACAAGACCTGTTTGGTTATAATGGCAAAGATCTTTACAGCTTGTTTGGGGGGAACTGGAGCTGTGAATTTGGCCTTGAAAAGGAGGATGAGAAAAGTTGCTGCTTTGACACTCTTGAGAGCCAAACAGAAACAAGCCATCATTATGAGAATTGGAATTCTCCTTCTCAACCTCCTCCTCCTTCAATAGTGCCTCACTTGAACGAGTGGCACCATCACAATTCATCCCCAGAAGGCCTAATCCCAAAACAAGTTCCGGAATTTGATTCCACTCTTCCGACCGCCACATCATCTTCCTCTCGCCCCAAGAGACGCCGATCCAAGAGCAAAAAGAACCAAGAAGAAATCGAAAACCAGAGAATGACTCACATTGCAGTCGAGCGCAACCGCCGCAAGCAGATGAATGAGTATCTCTCCGTCCTCCGCTCATTGATGCCTGAATCCTATGTTCAAAGGGGTGATCAAGCGTCTATCATAGGAGGTGCGATCAACTTTGTCAAGGAGCTTGAGCAGCGCCTGCAGTGGCTCGGTGGTCAGAAAGAGAAGGAAAATGGCGAGGCTGGAAGTTCCGCACCCTTCTCTGAATTCTTCACTTTTCCACAGTACTCAACAAGCTCAACTGTGAGTGATAACTCGGTGTCCATGGCGGATACTGTGGGTGGAAACCAGGCGGTCATTGCTGACATTGAAGTGACCATGGTGGAGAGCCATGCCAACCTGAAAATAAGGTCGAGAAGGCGGCCGAAGCAGCTGCTGAGAATGGTGTCCGGATTGCAATCCCTGCACCTCACAATCCTCCACCTCAATGTCACAACCATTGATCAAACTGTGCTTTATTCTCTCAGTGTGAAGGTAGAAGATGACTGCAAGCTGACTTCAGTAGATGATATTGCCACTGCTGTGTATCAGATGCTAGGTAGGATTCAAGAAGAGGCTATGATAAATTGA 972 47.74 MALEAVVFQQDLFGYNGKDLYSLFGGNWSCEFGLEKEDEKSCCFDTLESQTETSHHYENWNSPSQPPPPSIVPHLNEWHHHNSSPEGLIPKQVPEFDSTLPTATSSSSRPKRRRSKSKKNQEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQWLGGQKEKENGEAGSSAPFSEFFTFPQYSTSSTVSDNSVSMADTVGGNQAVIADIEVTMVESHANLKIRSRRRPKQLLRMVSGLQSLHLTILHLNVTTIDQTVLYSLSVKVEDDCKLTSVDDIATAVYQMLGRIQEEAMIN* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2775387 2776822 - Vvi14g236 Vvi14g236 775303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g236 323 Pfam Helix-loop-helix DNA-binding domain 127 178 IPR011598 GO:0046983
Vvi14g236 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 177 IPR011598 GO:0046983
Vvi14g236 323 Gene3D - 116 192 IPR036638 GO:0046983
Vvi14g236 323 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 323 - -
Vvi14g236 323 PANTHER MAX DIMERIZATION, MAD 1 323 - -
Vvi14g236 323 MobiDBLite consensus disorder prediction 54 130 - -
Vvi14g236 323 CDD bHLH_AtFAMA_like 129 203 - -
Vvi14g236 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 192 IPR036638 GO:0046983
Vvi14g236 323 SMART finulus 132 183 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g214 Vvi14g236 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13996 PF00010 HLH 8.00E-10 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g236 - - vvi:100261443 611.298