Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g239 ATGGAAACCAACACCACTGCTACTCCTGCAAGTCCACCTGCAAACAACCATACCCATATTCACCATCACTCTCATTCACAACCGGATACCCATCACCATGGCATTCTCCCCTCCGATTCCATGCTTGTTATCATCATACCCACCATCTCAATTTTGCTCCTTGTTGCCATAATTGTAATTGTAATAATGCTCCGGCGACTCAAATCTGCAAAAAACAGAGGCAACAGCAAAAGCAATAGCAGCAGCAGCGGAAACCAGAATTGCAACTTCATTGCTCATACTGCTATAAACTTCAATTCTAGCCCAGATGTGAAGAGTGGGTGTTTATATGGAGGAAGTTTGATCCGTACACCTGCAAGTAGATTTAAAGGAGTTCAAGTATTCACATACAAGGAGCTTGAAATGGCCACAGATAAGTTCAGTGAAGCCAATGTGATAGGGAATGGAGGGTTCGGAGTGGTGTACAGAGGAGTCCTTAGCGATGGGACTGTGGCAGCTATCAAGGTGCTGCGCAGGGATGGGAAGCAAGGGGAGCGTGCATTCAGGATGGAGGTGGACCTACTGACCCGTTTACACTCTCTTTACTTGGTGGAGCTGCTTGGCTACTGTGCAGACCAACACTACAGGCTTCTGATATTTGAATACATGCCTAATGGTACATTGCAAAGCCAACTCCACCCCTCCCACAACCAACAGAGAGTGTTGGATTGGGGGACACGGTTGAGGGTGGCCCTTGATTGTGCTAGGGCCCTTGAGTTCCTCCATGAGCATGCAGTCCCCTCGATCATTCACCGTGATTTCAAGCCCAGCAACATTCTCCTAGATCAAAATTTCAGAGCCAAAGTCTCTGATTTTGGCTTGGCCAAGACAAGTTCTGACAAGATCAATAGTCAGATTCCGACTCGGGTAATTGGGACCACTGGATATCTAGCCCCCGAGTATGCTTCATCAGGAAAGCTTACTACAAAATCAGATGTGTATAGCTATGGTGTGGTTCTTCTAGAGCTCTTAACGGGCCGTGTACCACTTGATACCAAGCGCCCCCCTGGAGAGGATGTCCTGGTCTCATGGGCTCTTCCAAGGTTAACTAACAGGCAAAAACTAGTGGAAATGGTTGACCCAGCTCTACAAGGCCGCTACTCAAAGAAGGATCTAATTCAGATAGCCGCTATTGCAGCTGTGTGTGTGCAACATGAAGCAGATTACCGGCCCCTAATGACAGATGTTGTGCAGTCACTAATCCCTCTGGTTAAGAATCACTCTTCTGTTAGTTCCTCTTGTTCCTCCAGATTTCAGATGCTGAGCCCAAGGTATTAG 1317 47.3 METNTTATPASPPANNHTHIHHHSHSQPDTHHHGILPSDSMLVIIIPTISILLLVAIIVIVIMLRRLKSAKNRGNSKSNSSSSGNQNCNFIAHTAINFNSSPDVKSGCLYGGSLIRTPASRFKGVQVFTYKELEMATDKFSEANVIGNGGFGVVYRGVLSDGTVAAIKVLRRDGKQGERAFRMEVDLLTRLHSLYLVELLGYCADQHYRLLIFEYMPNGTLQSQLHPSHNQQRVLDWGTRLRVALDCARALEFLHEHAVPSIIHRDFKPSNILLDQNFRAKVSDFGLAKTSSDKINSQIPTRVIGTTGYLAPEYASSGKLTTKSDVYSYGVVLLELLTGRVPLDTKRPPGEDVLVSWALPRLTNRQKLVEMVDPALQGRYSKKDLIQIAAIAAVCVQHEADYRPLMTDVVQSLIPLVKNHSSVSSSCSSRFQMLSPRY* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2840388 2843169 - Vvi14g239 Vvi14g239 775306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g239 438 Pfam Protein kinase domain 141 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g239 438 Gene3D Phosphorylase Kinase; domain 1 114 215 - -
Vvi14g239 438 Gene3D Transferase(Phosphotransferase) domain 1 216 433 - -
Vvi14g239 438 ProSitePatterns Protein kinases ATP-binding region signature. 146 168 IPR017441 GO:0005524
Vvi14g239 438 MobiDBLite consensus disorder prediction 1 17 - -
Vvi14g239 438 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 3 436 - -
Vvi14g239 438 CDD STKc_IRAK 146 416 - -
Vvi14g239 438 MobiDBLite consensus disorder prediction 1 33 - -
Vvi14g239 438 PANTHER OS01G0750732 PROTEIN 3 436 - -
Vvi14g239 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Vvi14g239 438 ProSiteProfiles Protein kinase domain profile. 140 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g239 438 SUPERFAMILY Protein kinase-like (PK-like) 121 413 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76214 PF00069 Pkinase 1.50E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g239 - - vvi:100259692 801.586