Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g25 ATGACTAGAAAGAAGGTGAAGCTTGCATACATCACTAATGATTCTGCAAGAAAAGCAACATTCAAGAAAAGGAAGAAGGGTCTGATGAAGAAGGTGAGTGAGTTGAGCACTCTCTGTGGGATTGATGCCTGTGCCATCCTTTATAGCCCATATGACTCTCAGCCTGAAGTCTGGCCTTCCCCTTTGGGAGTCCAACGTGTGCTTGCCCATTTCAAGAAGATGCCTGAGATGGAGCAAAGCAAGAAGATGGTCAACCAGGAGAGCTTCCTCAGGCAAAGGATAGCAAAAGGCAATGAGCAGCTCAAGAAACAGCGCAAGGACAACCGCGAAAAGGAGATTACTCAAGTCATGTACCAGAGCTTGACTGGTAAGGGCCTGCAGAATCTCAATATAGTTGATTTGAATGATCTTGGGTGGATGATTGACCAGAACTTGAAGGATATTCACAAGAGGATTGAGTCTCTCAACAAAGAGGCTCAGTCCCAGGCAGCAGCAGCGGCCGCAGCTGCAGCAGGACAACTGATAAAGACTGGAGGGAAAGCACAGGAGGAGAAACCAGCCTTTGACAGCATGGATGCCATTCAGAGGCAGCAGTGGTTCGTTGACTTGGTGAACCCCAATGAGCAGATGGGCTTTGCTGGAGATGACATGATGCTGCCATTTGGGGACAACAACCACAACGCTCTCTGGCCTAATGGCTTTTTCCCTTGA 711 48.38 MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPSPLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQSLTGKGLQNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAQSQAAAAAAAAAGQLIKTGGKAQEEKPAFDSMDAIQRQQWFVDLVNPNEQMGFAGDDMMLPFGDNNHNALWPNGFFP* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 307221 307932 + Vvi14g25 Vvi14g25 775092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g25 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi14g25 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi14g25 236 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vvi14g25 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vvi14g25 236 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi14g25 236 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vvi14g25 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi14g25 236 Coils Coil 145 165 - -
Vvi14g25 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 208 - -
Vvi14g25 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 208 - -
Vvi14g25 236 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13997 PF00319 SRF-TF 8.80E-19 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g25 - - vvi:100254549 461.455