Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi14g25 | ATGACTAGAAAGAAGGTGAAGCTTGCATACATCACTAATGATTCTGCAAGAAAAGCAACATTCAAGAAAAGGAAGAAGGGTCTGATGAAGAAGGTGAGTGAGTTGAGCACTCTCTGTGGGATTGATGCCTGTGCCATCCTTTATAGCCCATATGACTCTCAGCCTGAAGTCTGGCCTTCCCCTTTGGGAGTCCAACGTGTGCTTGCCCATTTCAAGAAGATGCCTGAGATGGAGCAAAGCAAGAAGATGGTCAACCAGGAGAGCTTCCTCAGGCAAAGGATAGCAAAAGGCAATGAGCAGCTCAAGAAACAGCGCAAGGACAACCGCGAAAAGGAGATTACTCAAGTCATGTACCAGAGCTTGACTGGTAAGGGCCTGCAGAATCTCAATATAGTTGATTTGAATGATCTTGGGTGGATGATTGACCAGAACTTGAAGGATATTCACAAGAGGATTGAGTCTCTCAACAAAGAGGCTCAGTCCCAGGCAGCAGCAGCGGCCGCAGCTGCAGCAGGACAACTGATAAAGACTGGAGGGAAAGCACAGGAGGAGAAACCAGCCTTTGACAGCATGGATGCCATTCAGAGGCAGCAGTGGTTCGTTGACTTGGTGAACCCCAATGAGCAGATGGGCTTTGCTGGAGATGACATGATGCTGCCATTTGGGGACAACAACCACAACGCTCTCTGGCCTAATGGCTTTTTCCCTTGA | 711 | 48.38 | MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPSPLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQSLTGKGLQNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAQSQAAAAAAAAAGQLIKTGGKAQEEKPAFDSMDAIQRQQWFVDLVNPNEQMGFAGDDMMLPFGDNNHNALWPNGFFP* | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 307221 | 307932 | + | Vvi14g25 | Vvi14g25 | 775092 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi14g25 | 236 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi14g25 | 236 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi14g25 | 236 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi14g25 | 236 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 51 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi14g25 | 236 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Vvi14g25 | 236 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi14g25 | 236 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi14g25 | 236 | Coils | Coil | 145 | 165 | - | - | |
Vvi14g25 | 236 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 | 1 | 208 | - | - | |
Vvi14g25 | 236 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 208 | - | - | |
Vvi14g25 | 236 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677|GO:0046983 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13997 | PF00319 | SRF-TF | 8.80E-19 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi14g25 | - | - | vvi:100254549 | 461.455 |