Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g34 ATGGCTGCAGGCGGTGGCTCCGGTGGCGGCGGATCGGGTGTTGCAGAGGCTCAGTACTCGGGGGCGAAGACGTCTGTATGGTGGGACATAGAGAATTGCCAGGTCCCCAAGGGCTGCGAACCCCACTCCATCGCCCAGAACATAAGCTCAGCTCTGTTCACGATGAACTACAAAGGTCCCGTCTCCATCTCCGCCTACGGCGACACCCATCGGATTCCTCCTCCCGTTCAGCAAGCCCTCTCCAGCACCGGCATCGCCCTCAACCACGTCCCCGCTGGCGTTAAAGATGCAAGCGACAAAAAGATTCTTGTTGACATGCTGTTCTGGGCTGTGGACAATCCTGCACCTGCTAATTATTTGCTCATTTCTGGTGATCGAGACTTCTCGAATGCACTCCATCAGTTGCGCATGAGAAGATACAACATTCTTCTTGCACAACCCCAAAAGGCTTCTGCACCGCTCATTGCAGCAGCAAAGAGCGTGTGGCTCTGGACGAGTCTTCTGGCAGGAGGACTGCCACTAACAAATGGTGAATCACAACAACTTGGTAATAATAGCTATTCCAGAAATCAGAAGCTCCCAAATATGGGGAGAACTGCTGATATTAAAAATTCGAATATTGAGTCTCCAAACCCTGGAAGCTTAAGCGGACAGCAGAAAGGACATATTTTGCATGATACGCCTTCATTTTACCATGATCCTCAGAACAATAGGTACTCTCGTGGACCAGAATTTCCACCCTCATCATCCTCAGCTATGGGTACCACGAATGTTCCCAGTAATGGTATATGGGGATCTCATGGATGCCAAAAACCTTCTGAGTATGTCCAAGGCCTCATAGGGGTTATCTTACTTGCCCTGAACACCCTAAAAAATGAAAAGATTTTGCCTACTGAAGCAAATATAGCTGATTGTATTCGATATGGAGACCCCAAGCACCAAAATACTGATGTTAAGAAGGCCCTGGAAAGTGCTATTGAGCAGCAGATGGTAATTAAGCAAAAATTAGGTACTGTTCAGTTATATGTTGGAAAAAATGACAGACTATGGAAGTGCGTGAACCTTATGGGTGGTAATCCTAAACAGTACTCTAAAGCAACTTGGGATGGAATCCAGAATTTTCTAATATCCCCTGCTGGACGATCTGCGATAATGGCTTCTCAATGCAAGTATGAAGCAGCTATTATTTTAAAGAATATGTGCTTGAAAGACCGTGCTTTGGGAGATGTACTTCAGATTTTGAACATGGTTATCAGTGCAAAGAAATGGATCACACATCTTCAATCAGGATGGCAACCGGTTAACATTTCTCTTCCCGAGTCTAACACTGATTCAGGGGCCATAGCTGCCACATAA 1356 46.53 MAAGGGSGGGGSGVAEAQYSGAKTSVWWDIENCQVPKGCEPHSIAQNISSALFTMNYKGPVSISAYGDTHRIPPPVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLIAAAKSVWLWTSLLAGGLPLTNGESQQLGNNSYSRNQKLPNMGRTADIKNSNIESPNPGSLSGQQKGHILHDTPSFYHDPQNNRYSRGPEFPPSSSSAMGTTNVPSNGIWGSHGCQKPSEYVQGLIGVILLALNTLKNEKILPTEANIADCIRYGDPKHQNTDVKKALESAIEQQMVIKQKLGTVQLYVGKNDRLWKCVNLMGGNPKQYSKATWDGIQNFLISPAGRSAIMASQCKYEAAIILKNMCLKDRALGDVLQILNMVISAKKWITHLQSGWQPVNISLPESNTDSGAIAAT* 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 390996 395635 - Vvi14g34 Vvi14g34 775101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g34 451 Gene3D - 18 166 - -
Vvi14g34 451 Pfam OST-HTH Associated domain 388 446 IPR025677 -
Vvi14g34 451 Pfam NYN domain 23 159 IPR021139 GO:0004540
Vvi14g34 451 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 8 191 - -
Vvi14g34 451 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 209 435 - -
Vvi14g34 451 MobiDBLite consensus disorder prediction 178 257 - -
Vvi14g34 451 MobiDBLite consensus disorder prediction 178 223 - -
Vvi14g34 451 PANTHER LIMKAIN B LKAP 8 191 IPR024768 GO:0005777|GO:0010468|GO:1903231
Vvi14g34 451 MobiDBLite consensus disorder prediction 230 257 - -
Vvi14g34 451 PANTHER LIMKAIN B LKAP 209 435 IPR024768 GO:0005777|GO:0010468|GO:1903231
Vvi14g34 451 CDD PIN_limkain_b1_N_like 23 147 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g468 Vvi14g34 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g34 - - vvi:100242533 510.76