Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g373 ATGATGGCTTCCCAGTTTGGTTCAATGTTGACAAGGTTGGGTAATCTATCCACTTCTGATCATGCTTCTGTGGTGTCCATCAATCTATTTGTGGCACTCCTTTGTGGTTGCATTGTGATTGGTCATCTTCTTGAGGAGAACCGGTGGGTGAATGAGTCAATCACTGCCCTTGTGATTGGTGTGTGTACTGGAGTTGTTATTTTGCTGACAAGTGGGGGAAGAAGCTCACATCTTCTGGTCTTCAGTGAAGATCTTTTCTTTATATATCTTCTTCCGCCCATTATATTTAATGCTGGGTTTCAGGTGAAAAAGAAGCAATTTTTTCGGAACTTTATCACTATCATGCTGTTTGGTGCGGTTGGAACACTAATATCTTGTGGCATAATAACATCAGGTGTTATGCAATTCTTTAGTAAATTGGATATTGGTTCCTTCGATATAGGAGATTATCTAGCCATTGGTGCGATATTTTCAGCAACAGATTCTGTTTGCACGTTGCAGGTGCTTAACCAGGATGAGACGCCTTTACTTTATAGCCTGGTCTTTGGGGAGGGGGTTGTAAATGATGCAGCATCAGTTGTTCTTTTCAATGCAATCCAGAGCTTTGATCTCACCCACACCAATCTCAGGATTGCTTTGCAGTTTATTGGCAACTTTTTTTATTTATTTTTTACAAGCACTATGCTAGGAGTCGTAGCTGGGTTGCTCAGTGCTTACATTATCAAAACTTTGTATTTTGGCAGGCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAACTATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAGCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAGAAATGGAGATTTGTGAGCAAAACTCCTGGAACATCAGTTGCTGTGAGTTCGATACTGATAGGTTTGGTTCTGGTTGGAAGAGCAGCTTTTGTTTTTCCCCTATCCTTTTTATCCAACTTAGCCAAGAAGAACCCAACTGAAAAAATCACTTTCAGGCAGCAAGTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTTGCTTATAATCAGTTTGCAAGGTCGGGACATACTCAATTGCGATCAAATGCAATCATGATTACCAGCACCATAACAGTTGTTCTTTTCAGCACAGTGGTATTTGGTTTAATGACTCAACCTCTTATAAGATTCTTGCTTCCTCATTCAAAAAACACAACCAGCATGGTATATTCAGACTCATCAACTCCAAAATCGTTTGCGGTGCCACTTCTTGAGAGCGCACAGAACTCTGATGCTGATATGGGTGGCCATGGTTTCCCACGCCCTAGTAGCCTTCGCATGCTCCTGACAACCCCGTCTCGCAGTGTTCATCACTACTGGCGCAAGTTTGATGATGCCATTATGCGTCCAATGTTTGGTGGGCGGGGTTTTGTCCCATTCGTTCCTGGCTCACCAACTGAAAGGTCTGCCCCTCAGTAA 1623 42.82 MMASQFGSMLTRLGNLSTSDHASVVSINLFVALLCGCIVIGHLLEENRWVNESITALVIGVCTGVVILLTSGGRSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFITIMLFGAVGTLISCGIITSGVMQFFSKLDIGSFDIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDAASVVLFNAIQSFDLTHTNLRIALQFIGNFFYLFFTSTMLGVVAGLLSAYIIKTLYFGRHSTDREVALMMLMAYLSYILAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSKTPGTSVAVSSILIGLVLVGRAAFVFPLSFLSNLAKKNPTEKITFRQQVIIWWAGLMRGAVSVALAYNQFARSGHTQLRSNAIMITSTITVVLFSTVVFGLMTQPLIRFLLPHSKNTTSMVYSDSSTPKSFAVPLLESAQNSDADMGGHGFPRPSSLRMLLTTPSRSVHHYWRKFDDAIMRPMFGGRGFVPFVPGSPTERSAPQ* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4884367 4918654 + Vvi14g373 Vvi14g373 775440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g373 540 Pfam Sodium/hydrogen exchanger family 29 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vvi14g373 540 PANTHER SODIUM/HYDROGEN EXCHANGER 9 539 IPR018422 GO:0006812|GO:0015299|GO:0016021
Vvi14g373 540 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 26 453 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vvi14g373 540 PANTHER SODIUM/HYDROGEN EXCHANGER 2 9 539 - -
Vvi14g373 540 Gene3D - 147 198 - -
Vvi14g373 540 PRINTS Na+/H+ exchanger signature 85 96 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vvi14g373 540 PRINTS Na+/H+ exchanger signature 99 113 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vvi14g373 540 PRINTS Na+/H+ exchanger signature 114 122 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vvi14g373 540 PRINTS Na+/H+ exchanger signature 154 164 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g373 - - vvi:100259022 1055.82