Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g39 ATGACAACTGATCTTAATGCTGAACTATCCAAGAAAACTGATGTCTTGGGTCTCAAGGTTTGGGAATTGATTGGGATTGTTGTCGCATTATTCATCATAATTATCCTGTGTGTGTTATCATTGTGTCTCACTTCAAGGAAGAAATCAAGAAGTTCTAGAGATAGGCTTCCCGTTAATCAAATCCCAACTGTTTCAAAGGAAATCAAGGAAGTAAGGGTGGAGCAAGTATCGACAAATGAATTTGTTCCACGTGATGGGATTCTTCTTACCATTCATGACAAATCCAGTGACAAAGAATCAGATAAGGTCCTGGTCCATTTGGGTATGGGGAAGACAAAGAATGGAGATAATAGCAGTCAATCTGGTTCATTTCATCATTTAGAGAAAGATGGATGTGGGTCTCAATCAGGGGAAGAAGGGAGCTCTGGCACAGTTACCGTGTACAAGCCTTCTTCATCATATCCAATAACTGCTCCTTCTCCTCTTGTTGGTTTGCCTGAATTCTCTCATTTGGGTTGGGGTCACTGGTTCACATTAAGGGATCTTGAACTTGCGACAAATCGGTTTTCAAAGGAAAATGTGCTTGGTGAAGGTGGATATGGAGTGGTTTACAGAGGACAGTTGATCAATGGGACGCCAGTGGCAGTTAAAAAGATCCTCAACAACCTGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACCCATAGGATGTTGGTCTATGAGTATGTCAGCAATGGGAATTTGGAGCAATGGCTTCATGGAGCTATGCGCCAGCATGGATTTCTTACTTGGGATGCCCGCATGAAGATTCTTCTCGGGACAGCTAAGGCTCTTGCCTACTTGCATGAGGCCATTGAGCCAAAAGTGGTGCACCGGGACATTAAATCAAGTAACATTTTGATTGATGATGATTTCAATGCCAAGGTTTCTGATTTCGGCCTGGCCAAGTTGTTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGGATATGTGGCTCCTGAATATGCAAATACTGGCCTTTTGAATGAAAAAAGTGATGTTTATAGCTTTGGGGTTGTGCTTTTGGAAGCAATTACTGGAAGAGATCCTGTGGACTATGGTCGCCCTGCCCAAGAGGTTAATCTGGTTGATTGGCTTAAAATGATGGTTGGAAGCAGGAGGTCAGAAGAAGTTGTAGACCCAAACATTGAGGTCAGACCATCTACAAGAGCCTTAAAACGAGCTCTTTTGACTGCTCTGAGATGTGTTGATCCAGATTCTGAGAAGAGACCCAAAATGGGCCAAGTTGTACGTATGCTCGAGTCTGAGGAATATCCCATACCAAGAGAGGATCGAAGGCACCGAAGAACTCAAGCAGGTAGCATGGAGATTGAGTCTCAGAAGGAGAATTCTGACACTGATCAGAGTGAAAATCTGGGTTCAAGGTCAGAGAGTAGAGGCTACCACAGGACATAA 1536 43.55 MTTDLNAELSKKTDVLGLKVWELIGIVVALFIIIILCVLSLCLTSRKKSRSSRDRLPVNQIPTVSKEIKEVRVEQVSTNEFVPRDGILLTIHDKSSDKESDKVLVHLGMGKTKNGDNSSQSGSFHHLEKDGCGSQSGEEGSSGTVTVYKPSSSYPITAPSPLVGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYRGQLINGTPVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVSNGNLEQWLHGAMRQHGFLTWDARMKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPAQEVNLVDWLKMMVGSRRSEEVVDPNIEVRPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPIPREDRRHRRTQAGSMEIESQKENSDTDQSENLGSRSESRGYHRT* 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 432691 438118 + Vvi14g39 Vvi14g39 775106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g39 511 MobiDBLite consensus disorder prediction 110 146 - -
Vvi14g39 511 CDD STKc_IRAK 195 461 - -
Vvi14g39 511 MobiDBLite consensus disorder prediction 461 511 - -
Vvi14g39 511 ProSiteProfiles Protein kinase domain profile. 189 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g39 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Vvi14g39 511 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 2 510 - -
Vvi14g39 511 PANTHER OS01G0323000 PROTEIN 2 510 - -
Vvi14g39 511 Gene3D Transferase(Phosphotransferase) domain 1 265 476 - -
Vvi14g39 511 Gene3D Phosphorylase Kinase; domain 1 171 264 - -
Vvi14g39 511 SUPERFAMILY Protein kinase-like (PK-like) 173 469 IPR011009 -
Vvi14g39 511 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524
Vvi14g39 511 Pfam Protein kinase domain 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g39 511 MobiDBLite consensus disorder prediction 461 492 - -
Vvi14g39 511 SMART serkin_6 189 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g253 Vvi14g39 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76220 PF00069 Pkinase 7.60E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g39 - - vvi:100261416 966.452