Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g457 ATGAATGGTGTAATAAATCCTGAAGCAGATGATTACTCTGAGTTTGTGGAAGTTGATCCCACTGGAAGATATGGCAGATACAATGAAATACTTGGAAAGGGAGCTTCAAAGACAGTTTACAGAGCATTCGATGAGTATGAAGGCATTGAAGTTGCTTGGAACCAGGTCAAGCTTTATGATTTCCTGCAAAGCCCTGAAGATCTTGAGAGGCTCTACTGTGAAATTCATCTCCTTAAAACAATGAAACACAATAACATTATGAAGTTCTATACTTCTTGGGTTGATACTGCTAATAGGAACATCAATTTTGTCACTGAGATGTTCACTTCTGGGACTCTCAGGCAGTATAGGCAAAAGCACAAGAGAGTTAACATTAGAGCAGTGAAGCATTGGTGCAGACAGATCTTGAGAGGGCTTCTCTACCTCCATAGCCATGACCCACCTGTGATTCACAGAGATCTCAAGTGTGACAATATTTTTGTAAATGGCAACCAAGGAGAAGTTAAGATTGGTGATCTAGGGCTTGCTGCAATTCTCCGAAAATCACATGCTGCTCACTGTGTTGGGACACCTGAGTTCATGGCACCAGAAGTGTATGAAGAGGAGTACAATGAATTAGTGGACATTTACTCTTTTGGTATGTGCATCTTGGAAATGGTCACTTTTGAATATCCATATAGTGAATGTACTCATCCTGCTCAGATCTACAAAAAGGTTATCTCGGGGAAAAAACCAGATGCTTTATATAAAGTGAAGGATCCGGAAGTGCGAGAATTTGTTGAGAAATGCTTGGCTTCTGTGTCTCTGAGGCTCTCCGCTAGAGAGCTTTTGCAGGATCCTTTTCTCCGAATAGATGATTGTGAATCCGACTTGAGACCAATAGAGTGCAGGAGAGAACCTGATGATATGATGGAACCAACTGGGATTGAGCTTTTTGAGTACCATGAAGACGAGCATCCTGCAAATGTGGACATAAGCATCAAAGGGAAGAGGCGGGAAGATGATGGCATCTTTCTAAGACTCAGGATTGCAGATAAAGAAGACCACATTCGTAACATCTATTTCCCATTCGACATTGAGATGGATACAGCATTGAGCGTTGCAACTGAAATGGTTGCTGAACTGGATATTACAGACCAAGACGTGACTAAAATAGCAGATATGATTGATGGGGAGATAGCATCCTTGGTCCCTGAATGGAAGCCAGGGCCAGGAATAGAAGAAACTCCCTGCTTTGCAACCTTAAACTTGTGCGCCAAGAACTTGCAAATATTCCAGTGTTCAAATGGATGTGCAGCAATGCATGGCCGGTTTGAGGAAATCACTTACCAAGTTGATGGGGCTGACCATCACATACCAGAGGGTCAATCAGAAGAATTGCATTATGATTATGAGAACGAAATTCAGCAGGTATTGAGGTGGCTGAAAGCTAAGCATCAAATGGAAATGAGAGGACTTAGAGATCTACAGTTAGGATTTGCATCAAAGCCTTCAAGTTTGGATAACAGACAACTCAAACCTGACAATGAGGGTCTTTTCTCAACACTCTCAAACACATCACAAGGACACAACAATGGGCTATTCCTGAAATCTTCTGCCTATGACAAGCATTTTACTTCTAATTGTGCTACTCAAGTCAACAAGTGCAGCCCCGATTTGGTAACCCACGGGGCCCGAAATTGTGAGGCGAACAAGGGGTCCCGAAGTGCAGAGGACATGGTCCATGTGGTTACTGCCAAGAGTTTCTACACTGCAGGCTCATTGCTTCCGTGCCCAATTCATAGGACAATGTCCCTACCAGTTGATGCTGTTGATATATAA 1821 42.72 MNGVINPEADDYSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTMKHNNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEEYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVREFVEKCLASVSLRLSARELLQDPFLRIDDCESDLRPIECRREPDDMMEPTGIELFEYHEDEHPANVDISIKGKRREDDGIFLRLRIADKEDHIRNIYFPFDIEMDTALSVATEMVAELDITDQDVTKIADMIDGEIASLVPEWKPGPGIEETPCFATLNLCAKNLQIFQCSNGCAAMHGRFEEITYQVDGADHHIPEGQSEELHYDYENEIQQVLRWLKAKHQMEMRGLRDLQLGFASKPSSLDNRQLKPDNEGLFSTLSNTSQGHNNGLFLKSSAYDKHFTSNCATQVNKCSPDLVTHGARNCEANKGSRSAEDMVHVVTAKSFYTAGSLLPCPIHRTMSLPVDAVDI* 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6462431 6466040 - Vvi14g457 Vvi14g457 775524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g457 606 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 338 392 IPR024678 GO:0004674|GO:0005524
Vvi14g457 606 Gene3D Transferase(Phosphotransferase) domain 1 108 287 - -
Vvi14g457 606 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g457 606 SMART serkin_6 25 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g457 606 ProSiteProfiles Protein kinase domain profile. 25 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g457 606 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 304 458 - -
Vvi14g457 606 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 460 593 - -
Vvi14g457 606 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 296 - -
Vvi14g457 606 Gene3D - 336 401 - -
Vvi14g457 606 CDD STKc_WNK 23 282 - -
Vvi14g457 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Vvi14g457 606 Gene3D Phosphorylase Kinase; domain 1 9 106 - -
Vvi14g457 606 SUPERFAMILY Protein kinase-like (PK-like) 28 283 IPR011009 -
Vvi14g457 606 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 304 458 - -
Vvi14g457 606 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 460 593 - -
Vvi14g457 606 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 296 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76223 PF00069 Pkinase 2.90E-50 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g457 K08867 - vvi:100854301 923.694