Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g500 ATGGAGCTTCCTTCAAACCTGCAGCCAAATGAAGCAAGCCCCGAGTGGATGAACAGGGCGGACAACGCATGGCAACTCACGGCAGCAACACTTGTAGGCATGCAGAGCATTCCAGGGCTAGTGATCCTCTATGGAAGCATGGTAAAGAAGAAATGGGCAGTGAACTCAGCTTTCATGGCCCTCTACGCCTTCGCAGCAGTAATAATATGCTGGGTAGGGTGGGGCTATCGCATGTCTTTCGGCGAAAAGCTAGTCTTCTTCTTAGGAAAGCCGGGGGTTGCCCTAGACGCCGATCTTCTTCTAGGCCAGGCGTTTTTAGGCATGTTTCCAACCGCTACAATGGTGTTCTTCCAACTTGTGTTTGCAGCCATTACAGTGATTTTGATAGGCGGAGCATTGTTGGGGAGAATGAATTTCGGTGCATGGATGTTGTTTGTGCCACTGTGGCTTACGTTTTCGTACACCATCGGGGCGTATAGCGTATGGTGTCCTGATGGGTGGCTGGCGAAGCTTGGAGTTATCGACTTTGCAGGTGGGTATGTGATTCACCTCTCCTCTGGCGTTGCTGGCTTCACTGCAGCATATTGGGTGGGACCAAGAGCGAGTGGTGACAGGGATAGCTTCCCACCCAATAATATGATTCTGATGCTTGGGGGTGCAGGGCTGCTATGGATGGGGTGGAGTGGTTTCAACGGCGGAGCTCCCGCTGTTGCCAGCTTGGACGCATCTCTGGCCGTCCTCAACACCCACGTCTGCGCTGCTACTAGTCTGATGACGTGGTTAATCCTGGACACCATTTTCTTTGGGAAGCCACGTGTGTTTGGTGCTATACAAGGCATGATCACTGGCTTGGTTTGCATCACGCCTGCAGCTGGAGTAGTCCAAGGTTGGGCAGCCATGCTAATGGGAGTATTCTCAGGAAGCATTCCATGGTACACAATGATGGTGCTCCACAACAAGCTCAAGTTCCTTACACAAGTGGACGACACCATGTCCATCTTCCACTCTCACGCCATTGCGGGAAGCTTAGGCGGCATACTCACCGGCTTCTTCGCCATGCCAAAGCTCTGCCGCCTCTTTTACATGGTACCCGATTGGGAGAAATACATTGGCCTAGCCTACGCTCTTCAAGAAGATCGAACCTCAAAAGGGTTACGACAAATGGGAATTCAACTTGTAGGCATTCTCTTCATTGTGTGCCTCAACATTGTCATGACTAGCTTCATTTGTTTGCTGATTAGAACCCTGGTTCCACTTAGACTAGCTGAGGATGAGTTGCAGATAGGCGACGATGCAGTGCATGGGGAGGAAGGTTATGCCTTGTGGGGTGATGGGGAGATATTTGAGAATTCTAAGAATAATTCAGTTTTTGACATGGAAGAATTTGTGTCTGTGCCCTCAAAGTCTCTGGATGATGTTTAG 1422 50.35 MELPSNLQPNEASPEWMNRADNAWQLTAATLVGMQSIPGLVILYGSMVKKKWAVNSAFMALYAFAAVIICWVGWGYRMSFGEKLVFFLGKPGVALDADLLLGQAFLGMFPTATMVFFQLVFAAITVILIGGALLGRMNFGAWMLFVPLWLTFSYTIGAYSVWCPDGWLAKLGVIDFAGGYVIHLSSGVAGFTAAYWVGPRASGDRDSFPPNNMILMLGGAGLLWMGWSGFNGGAPAVASLDASLAVLNTHVCAATSLMTWLILDTIFFGKPRVFGAIQGMITGLVCITPAAGVVQGWAAMLMGVFSGSIPWYTMMVLHNKLKFLTQVDDTMSIFHSHAIAGSLGGILTGFFAMPKLCRLFYMVPDWEKYIGLAYALQEDRTSKGLRQMGIQLVGILFIVCLNIVMTSFICLLIRTLVPLRLAEDELQIGDDAVHGEEGYALWGDGEIFENSKNNSVFDMEEFVSVPSKSLDDV* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7275720 7279576 + Vvi14g500 Vvi14g500 775567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g500 473 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vvi14g500 473 Coils Coil 473 473 - -
Vvi14g500 473 Pfam Ammonium Transporter Family 23 439 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vvi14g500 473 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005887
Vvi14g500 473 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005887
Vvi14g500 473 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005887
Vvi14g500 473 PANTHER AMMONIUM TRANSPORTER MEP2 1 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vvi14g500 473 SUPERFAMILY Ammonium transporter 16 421 - -
Vvi14g500 473 ProSitePatterns Sodium:solute symporter family signature 2. 265 285 IPR018212 -
Vvi14g500 473 TIGRFAM amt: ammonium transporter 21 439 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vvi14g500 473 Gene3D Ammonium transporter AmtB like domains 5 456 IPR029020 -
Vvi14g500 473 PANTHER AMMONIUM TRANSPORTER 1 473 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g500 K03320 - vvi:100264163 942.954