Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g550 ATGGAGGGGGTTGAAGAAGCTAACAAATCAGCTGTTGAGAGCTGTCATAGAGTTCTTAGTTTCTTATGCCAACCTCAAGATCAGGTTCAGTATAGAAACTTAATGATGGAGACAGAAGAGGCTGTGTTCAAGTTCAAGAGGGTTGTGTCTCTTCTCAACAATGGCTTTGGCCATGAAAGAGTGAGAAAGTTCAGGAGATTAAGATCATCTTTGCCTCAGAGCATCTTTCTAGAAACCCCTAATTACAAACCGAATCCTTCACCAAAGCCTCTCCAATTACTCCCAACTAATTTCCTTGAAAACCCACTTCCAGAAATAGATTCAAAAGCCAAAATCAAGCCTCCTTTGCAAATTATGAAGTATCAAGCTGACATGATGTACTCTAGGAGTAACAGTGGAATAAACCTTAAGTTTGATGGCTCTAGTTGCACTCCCACGATGTCATCCACTAGATCATTTATATCTTCTCTTAGCATGGATGGTAGTGTTGCTAACTTGGACGGAAATTCCTTCCATTTGATCGGTGTTCCTCAGCTTTCTGATCCAAATTCTCACCAACCCAGAAGGAGATGCAGTGGTAGGGGAGAAGATGGGAGCGTCAAATGTGGTAGCAGTGGTAAATGCCATTGTTCAAAGAGGAGGAAACTGAGGGTGAAGAGATCTATTAAAGTGCCTGCCATCAGTAACAAGGTTGCAGATATTCCTCCTGATGAGTATTCATGGAGGAAGTATGGGCAGAAGCCAATTAAGGGTTCACCACATCCTAGGGGGTACTATAAATGTAGCAGCATGAGAGGTTGCCCAGCAAGGAAGCATGTTGAGAGATGTTTGGAAGACCCTTCAATGCTTATTGTCACTTACGAAGGTGAGCATAACCATTCCAGGTTGCTGTCTTCACAATCTGCCCACACATAA 915 42.84 MEGVEEANKSAVESCHRVLSFLCQPQDQVQYRNLMMETEEAVFKFKRVVSLLNNGFGHERVRKFRRLRSSLPQSIFLETPNYKPNPSPKPLQLLPTNFLENPLPEIDSKAKIKPPLQIMKYQADMMYSRSNSGINLKFDGSSCTPTMSSTRSFISSLSMDGSVANLDGNSFHLIGVPQLSDPNSHQPRRRCSGRGEDGSVKCGSSGKCHCSKRRKLRVKRSIKVPAISNKVADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHSRLLSSQSAHT* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8753537 8756300 - Vvi14g550 Vvi14g550 775617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g550 304 Gene3D WRKY domain 219 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi14g550 304 PANTHER WRKY TRANSCRIPTION FACTOR 74-RELATED 3 304 - -
Vvi14g550 304 SUPERFAMILY WRKY DNA-binding domain 233 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi14g550 304 SMART WRKY_cls 235 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g550 304 MobiDBLite consensus disorder prediction 177 196 - -
Vvi14g550 304 Pfam Plant zinc cluster domain 188 233 IPR018872 -
Vvi14g550 304 ProSiteProfiles WRKY domain profile. 230 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g550 304 Pfam WRKY DNA -binding domain 237 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g550 304 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 304 IPR044810 GO:0003700
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14008 PF03106 WRKY 1.30E-26 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g550 - - vvi:100254726 595.119