Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g556 ATGGAACCCAATGATACCAGACTGACGTCTTACTTCCACCACCACCAGCAACAGCCACAGCCGCCGCCTCCTCCACCACCGCAGCCTCAACCCCACCACCAAACTCAAAACCCTGTCGCCGCCACTGCTGCTTCCCCCTCCAACGGCCTTCTTCCACCCTCCGAAAGGCCCCCTCTGGGGTACCACCACTCGGTGCCTTCGGCGGTTACGTCCCCGCCGGAGACCGTGAGGAGGAAGAGGGGGAGGCCTAGAAAGTATGGAACTTCAGAACAGGGTCTGAGTGCGAAGAAATCGCCTTCGTCATCGGTGCCAGTGCCGAAGAAGAAAGAGCAGGGCTTGGGAGGGTCTTCCAAGAAGTCCCAGTTGGTTTCTTTAGGCAATGCAGGGCAGAGTTTTACACCACATGTTATTACTGTGGCATCTGGAGAGGATGTTGCCCAGAAAATTATGTTCTTCATGCAACAAAGCAAGCGCGAAATATGTATTATGTCTGCATCTGGCTCGATATCTAATGCATCTCTTCGCCAGCCAGCCACATCAGGAGGCAATGTTGCATATGAGGGACGGTTTGAAATCCTTTCACTCACTGGATCTTATGTCCGTACTGAGATTGGAGGAAGAACTGGTGGGCTGAGTGTATGTCTGTCTAATACAGATGGCGAAATTATTGGTGGTGGCGTTGGTGGACCCCTAAAGGCCGCAGGCCCAGTTCAGGTTATCGTTGGCACCTTTCTAGTTGACTCCAAGAAAGATACCAGTACCGGTTTAAAAGCTGATGCTTCTCCCAAGTTTACATCACCAGTTGGTGGGGCATCTGTATCAAATGTAGGGTTTCGATCTGCAGTTGAATCTTCTGGAAGGATCCCAGTCATGGGGAACGATGATCATCAAGGCATCGGTGGAAGTCATTTCATGATTCAGTCTCGGGGTATGCAAATGGCACCTACACGGCCCACTGACTGGAGGAGTGGCCCTGATGCTAGAATCAATGTTGGCTATGATTTGGCAGGAAGAGGAGGACGTGGAGCATGCCAATCTCCAGAAAATGGGGACTATGAGCAGATTCCTGATTAG 1074 51.68 MEPNDTRLTSYFHHHQQQPQPPPPPPPQPQPHHQTQNPVAATAASPSNGLLPPSERPPLGYHHSVPSAVTSPPETVRRKRGRPRKYGTSEQGLSAKKSPSSSVPVPKKKEQGLGGSSKKSQLVSLGNAGQSFTPHVITVASGEDVAQKIMFFMQQSKREICIMSASGSISNASLRQPATSGGNVAYEGRFEILSLTGSYVRTEIGGRTGGLSVCLSNTDGEIIGGGVGGPLKAAGPVQVIVGTFLVDSKKDTSTGLKADASPKFTSPVGGASVSNVGFRSAVESSGRIPVMGNDDHQGIGGSHFMIQSRGMQMAPTRPTDWRSGPDARINVGYDLAGRGGRGACQSPENGDYEQIPD* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8848638 8872320 + Vvi14g556 Vvi14g556 775623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g556 357 MobiDBLite consensus disorder prediction 34 49 - -
Vvi14g556 357 MobiDBLite consensus disorder prediction 1 121 - -
Vvi14g556 357 MobiDBLite consensus disorder prediction 1 16 - -
Vvi14g556 357 CDD DUF296 133 244 IPR005175 -
Vvi14g556 357 MobiDBLite consensus disorder prediction 337 357 - -
Vvi14g556 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 244 IPR005175 -
Vvi14g556 357 ProSiteProfiles PPC domain profile profile. 129 265 IPR005175 -
Vvi14g556 357 MobiDBLite consensus disorder prediction 91 105 - -
Vvi14g556 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 349 IPR039605 GO:0003680
Vvi14g556 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 349 - -
Vvi14g556 357 Gene3D - 134 260 - -
Vvi14g556 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 249 - -
Vvi14g556 357 MobiDBLite consensus disorder prediction 17 33 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g556 - - vvi:100261576 656.366