Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g559 ATGGCGAACCGGTGGTGGGCTGGGCAGGTGGGTCTGCAAGGTGTAGATACCTCATCAGCTTCACCTGCAATGAAGAAACCAGATCTGGGAATATCCATGAATGAAAATGGAGGAAGCGGGAGCGGAGGCGGAGGAGAGGAAGAAGAGGAAAAAGAAAACAGTGATGAGCCCAGAGAGGGTGCAATTGAGGTGGCTACGCGCAGGCCTAGGGGCCGGCCGCCTGGCTCCAAGAACAAGCCAAAACCTCCGATTTTTGTGACAAGGGACAGCCCTAACGCTCTGCGCAGCCACGTTATGGAGGTGGCAAACGGCTCCGACATCACAGAAAGCATAGCCCAATTCGCGAGAAGGCGGCAACGAGGCGTCTGCGTGCTCAGCGCAAGTGGGACAGTCATGAACGTAACGCTTCGCCAGCCTTCTGCCCCTGGTGGTGCAGTTATGGCACTTCATGGCCGATTCGAAATTCTTTCCTTAACCGGCGCGTTCCTACCGGGACCAGCGCCACCAGGCTCCACTGGACTAACCATATACCTAGCAGGCGGTCAAGCTCAGGTCGTGGGTGGTAGCGTGGTGGGTTCACTCATAGCGGCAGGTCCAGTTATGGTGATTGCAGCTACCTTTTCGAATGCAACCTACGAGAGGCTCCCCCTAGAAGACGAAGAAGAGGCGGGCAGCGCAGCACAGGAGCAGCTCGCTGGCGGCGGAGGCGGTGGGATGGCAGATCCTTCCTCCATGCCGGTTTATAATTTGCCACCAAATTTGCTTCCAAATGGTGGACAACTGAACCATGATGCTTATGGTTGGGCACATGGGCGCCAGCCTTACTAG 828 56.52 MANRWWAGQVGLQGVDTSSASPAMKKPDLGISMNENGGSGSGGGGEEEEEKENSDEPREGAIEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDITESIAQFARRRQRGVCVLSASGTVMNVTLRQPSAPGGAVMALHGRFEILSLTGAFLPGPAPPGSTGLTIYLAGGQAQVVGGSVVGSLIAAGPVMVIAATFSNATYERLPLEDEEEAGSAAQEQLAGGGGGGMADPSSMPVYNLPPNLLPNGGQLNHDAYGWAHGRQPY* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9003936 9005570 - Vvi14g559 Vvi14g559 775626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g559 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 243 275 IPR014476 GO:0003680
Vvi14g559 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 242 IPR014476 GO:0003680
Vvi14g559 275 MobiDBLite consensus disorder prediction 219 252 - -
Vvi14g559 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 6 242 - -
Vvi14g559 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 243 275 - -
Vvi14g559 275 MobiDBLite consensus disorder prediction 1 91 - -
Vvi14g559 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 209 IPR005175 -
Vvi14g559 275 ProSiteProfiles PPC domain profile profile. 91 230 IPR005175 -
Vvi14g559 275 CDD DUF296 95 207 IPR005175 -
Vvi14g559 275 Gene3D - 94 224 - -
Vvi14g559 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 221 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g559 - - vvi:100244453 449.514