Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g59 ATGGGTGGTGATTATCTGCCTTTTCTGGCCATGTTTCTTGTCCAAATGGGCTATGCTGGAATGAATATCTTTGTGAAGCTGGCCATGGATTCTGGGATGAACCCCTTCATCCTCGTCGCTTATAGGCAAATCTTTGCCACTGTGGCCATGATTCCTTTTGCTTATTTTCTTGAGAGGAAAACAAGACCCAAGATTACAAGAATTGTTCTATTCCAAGCCTTCTTGTCTTCCATTTTCGGGGCAACCTTGAACCAGATCCTTTACTTCATTGGGCTAAAACATTCCAACCCGACACTAGGCTGCGCATTTAACAACCTTTTCCCAGCCATGACTTTCCTCCTTGCTGTCCCCTTCAGGCTTGAAACAGTGGGAATTAAGACAAGGCCAGGTCAGGCTAAGGTGCTGGGAACAGTAGTATGTATAGGAGGGGCCATGATACTGACATTTTACAGAGGACACGCCATCAATATCGGTGAATCCGGCATCCATTGGAAGTATGCAGAGCAGCTAAAAACTAGAGATTCTCAGAGTGGGGCCAACTTCATCTTGGGACCTTTTCTTCTGATCACCAGCTGTATTTCTTGGGCCATATGGTTCATAATTCAAGGAAGAATGTGTGTGAAGTTTGCAGCTCCTTACACAAGTTCCACTCTGATGTGCTTCATGGCCAGCATTGAGTGTGGAGTCATTGGCTTGTTTGTTGACCACCAACCTTCAGCATGGTCATTAAATGATTCCATCAGGCTTATTGCAGCTCTTTACTCGGCAATTGTGTGTACTGCACTAGCATTTTGCCTCATGTCCTGGACTATACAAAGGAAAGGTCCTCTCTACGTGTCAGTCTTCAGCCCCTTGCTCCTTGTCATTGTGGCCATTCTCAGCTGGGCCCTTCTTCGCGACAAACTACACTTTGGGACTGTTGTAGGGTCTCTGTTTGTTGTTTTGGGGCTCTATGCTGTTCTATGGGGAAAGGGTAAGGAGGAGAACCAGAGGGGCAGCAGGGAAGAGGCAGAAGAGGGGAAGGAAGACTTGGAGTTGCAGATAAATGGGAAGCTTTACATCAGAAAGGATCCTAACCCAGACCAACGGCGTCTAAACGTCCGTCACATTCGACCATCTATAAATGCTAGAGTCTCCTATCAATTCCTTCTCCTCTCGTTTGGGCAGCTTCTCGAGATCTGCCCTCTACGTTTCCCAAAATTACTATTCTGTCCTTACCAGACGCAAAACATGGGGTTGTCTTTCACCAAGCTTTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAATTCTTATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTGGGAGAGATCGTTACCACCATTCCCACAATTGGATTTAATGTGGAGACTGTGGAATATAAGAACATTAGCTTTACTGTCTGGGATGTTGGTGGCCAGGACAAGATTCGTCCTTTGTGGAGACACTACTTCCAGAACACTCAGGGTCTCATCTTCGTGGTTGATAGCAATGATCGTGACCGTGTAGTTGAGGCTAGGGACGAGCTACACAGGATGTTGAATGAGGATGAATTGAGGGATGCAGTGCTGCTTGTTTTTGCAAACAAGCAAGATCTTCCAAATGCCATGAATGCTGCTGAGATTACTGATAAGCTCGGTCTCCACTCTCTCCGTCAACGCCATTGGTATATCCAGAGCACATGTGCCACTTCTGGAGAAGGGCTGTACGAGGGGCTTGACTGGCTCTCCAACAACATTGCTAACAAGGCTTAG 1776 46.73 MGGDYLPFLAMFLVQMGYAGMNIFVKLAMDSGMNPFILVAYRQIFATVAMIPFAYFLERKTRPKITRIVLFQAFLSSIFGATLNQILYFIGLKHSNPTLGCAFNNLFPAMTFLLAVPFRLETVGIKTRPGQAKVLGTVVCIGGAMILTFYRGHAINIGESGIHWKYAEQLKTRDSQSGANFILGPFLLITSCISWAIWFIIQGRMCVKFAAPYTSSTLMCFMASIECGVIGLFVDHQPSAWSLNDSIRLIAALYSAIVCTALAFCLMSWTIQRKGPLYVSVFSPLLLVIVAILSWALLRDKLHFGTVVGSLFVVLGLYAVLWGKGKEENQRGSREEAEEGKEDLELQINGKLYIRKDPNPDQRRLNVRHIRPSINARVSYQFLLLSFGQLLEICPLRFPKLLFCPYQTQNMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA* 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 593132 600887 + Vvi14g59 Vvi14g59 775126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g59 591 CDD Arf1_5_like 428 586 IPR045872 GO:0003924
Vvi14g59 591 ProSiteProfiles small GTPase Arf family profile. 421 587 - -
Vvi14g59 591 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 151 - -
Vvi14g59 591 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 327 - -
Vvi14g59 591 Coils Coil 327 347 - -
Vvi14g59 591 Pfam ADP-ribosylation factor family 415 587 IPR006689 GO:0003924|GO:0005525
Vvi14g59 591 PANTHER WAT1-RELATED PROTEIN 1 340 IPR030184 GO:0016021|GO:0022857
Vvi14g59 591 SMART arf_sub_2 411 591 - -
Vvi14g59 591 PANTHER WAT1-RELATED PROTEIN 1 340 - -
Vvi14g59 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 589 IPR027417 -
Vvi14g59 591 PRINTS GTP-binding SAR1 protein signature 429 452 IPR006689 GO:0003924|GO:0005525
Vvi14g59 591 PRINTS GTP-binding SAR1 protein signature 457 481 IPR006689 GO:0003924|GO:0005525
Vvi14g59 591 PRINTS GTP-binding SAR1 protein signature 484 509 IPR006689 GO:0003924|GO:0005525
Vvi14g59 591 PRINTS GTP-binding SAR1 protein signature 529 550 IPR006689 GO:0003924|GO:0005525
Vvi14g59 591 SMART sar_sub_1 411 587 IPR006689 GO:0003924|GO:0005525
Vvi14g59 591 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020|GO:0016021
Vvi14g59 591 Pfam EamA-like transporter family 9 148 IPR000620 GO:0016020|GO:0016021
Vvi14g59 591 TIGRFAM small_GTP: small GTP-binding protein domain 426 560 IPR005225 GO:0005525
Vvi14g59 591 Gene3D - 414 591 IPR027417 -
Vvi14g59 591 SMART rab_sub_5 428 590 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g439 Vvi14g59 ECH
Vvi5g231 Vvi14g59 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g59 - - vvi:100261273 707.597