Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g604 ATGAGGATAATGATAAAGGGAGGCGTGTGGAAGAACACAGAGGATGAAATTCTGAAAGCGGCGGTGATGAAGTATGGGAAGAACCAGTGGGCCAGGATCTCTTCTCTTCTCGTTCGCAAATCGGCCAAGCAGTGCAAGGCTCGCTGGTACGAGTGGCTTGACCCTTCTATCAAGAAGACTGAATGGACCAGAGAAGAAGATGAGAAACTACTTCATCTTGCCAAGCTCATGCCAACACAATGGAGAACAATTGCTCCCATTGTTGGACGTACTCCTTCTCAGTGCCTTGAGCGTTATGAAAAGCTCCTTGATGCAGCCTGTGTCAAGGATGAGAACTACGAACCCGGAGATGACCCGCGTAAACTGCGTCCTGGAGAGATTGACCCAAACCCAGAATCAAAGCCTGCCCGTCCAGATCCTGTTGATATGGATGAGGATGAGAAGGAAATGCTTTCAGAAGCTCGAGCTCGGTTAGCCAACACGAGAGGTAAGAAGGCCAAAAGAAAAGCTAGAGAAAAGCAGCTTGAAGAAGCCAGGAGGCTCGCGAAAAGGAAAGGAATAGATTACAATGCGGAAATCCCCTTTGAGAAGAAGCCACCTCCAGGCTTTTTTGATGTCACTGATGAAGAAAGGCTAGTTGAGCAGCCCAAGTTTCCTACCACCATTGAAGAACTTGAAGGCAAAAGAAGGGTTGATGTAGAAGCACAATTAAGAAAACAGGATGTTGCAAAGAATAAAATTGCACAAAGACAAGATGCCCCATCAGCTATATTGCAAGCCAATAAGATGAATGACCCAGAAACAGTTAGGAAAAGGTCAAAACTGATGCTTCCTGCCCCACAGATTTCAGACCATGAGTTAGAGGAAATTGCAAAGATGGAACACCGGCTGGTAAGGGAGAAAATCCTGAAATTAGCATGA 921 46.15 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLAKRKGIDYNAEIPFEKKPPPGFFDVTDEERLVEQPKFPTTIEELEGKRRVDVEAQLRKQDVAKNKIAQRQDAPSAILQANKMNDPETVRKRSKLMLPAPQISDHELEEIAKMEHRLVREKILKLA* 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10271663 10279050 + Vvi14g604 Vvi14g604 775671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g604 306 CDD SANT_CDC5_II 55 106 - -
Vvi14g604 306 Gene3D - 5 58 - -
Vvi14g604 306 MobiDBLite consensus disorder prediction 113 149 - -
Vvi14g604 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Vvi14g604 306 Gene3D - 59 114 - -
Vvi14g604 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Vvi14g604 306 SMART sant 6 55 IPR001005 -
Vvi14g604 306 SMART sant 58 105 IPR001005 -
Vvi14g604 306 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Vvi14g604 306 Pfam Myb-like DNA-binding domain 10 70 - -
Vvi14g604 306 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Vvi14g604 306 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 295 - -
Vvi14g604 306 CDD SANT 10 53 IPR001005 -
Vvi14g604 306 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14013 PF13921 Myb_DNA-bind_6 1.90E-13 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g604 K12860 - vvi:100243262 565.074