Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g605 ATGTCTGATAGGCTAGCTAGAGAAAGGGCTGAGGAGGAAGCCAGGCAGCAGGCATTACTTAGGAAGAGATCAAAAGTACTGCAGAGAGAGCTCCCTAGACCTCCTGTTGCTTCATTAGACCTCATTAGAAATTCTCTGATGAGGGCTGATGAAGACAAGAGTTCCTTTGTTCCTCCTACGTTGATTGAGCAGGCTGATGAAATGATAAGAAAGGAGCTGCTTGGCTTACTTGAGCATGATAATGCAAAGTATCCACTTGATGAAAAAACAGAGAAGGAGAAAAAGAAAGGAGGCAAGCGCTCTGCAAATGGAAAATCTGCTGGTTCTGTCCCTGACATAGAAGATTTTGAAGAAGCTGAACTAAAAGAGGCTGACAATTTGATAAAGGAGGAAGTTCAGTTTCTCCGTGTGGCAATGGGACATGATAACGAATCACTTGATGAATTTGTTGAGGCACACAAAACATGCTTAAATGACCTGATGTACTTCCCTACTCGTGATGCTTATGGTCTGTCAAGTGTTGCTGGAAACATGGAGAAACTTGCAGCCCTGCAGAATGAATTTGACAATGTGAAAAAGAGGATGGAGGATGATACTAAGAAGGCACAACGCCTTGAGCAGAAGATAAAACTTCTTACGCATGGTTATCAGATGCGGGCTGGAAAACTGTGGACACAAATTGAGGCAACTTTCAAACAGATGGACACTGCTGGAACAGAACTTGAGTGTTTCCAAGCTTTGCAAAAACAAGAGCAACTAGCAGCATCACACAGGATCAATGGTCTTTGGGAGGAAGTTCAGAAGCAGAAGGAGCTTGAACAGACTTTACAGAGTCGCTATGGGGATCTTATTGCAGAGCAGGAAAGAATCCAATCTCTCATTAATGAATACAGAGTACAAGCAAAAATTCAAGAAGAAATTGCGGCAAAGAATCATGCTCTTGAGTTGGCTGAGGCTGAAATAAAATGA 969 42.62 MSDRLARERAEEEARQQALLRKRSKVLQRELPRPPVASLDLIRNSLMRADEDKSSFVPPTLIEQADEMIRKELLGLLEHDNAKYPLDEKTEKEKKKGGKRSANGKSAGSVPDIEDFEEAELKEADNLIKEEVQFLRVAMGHDNESLDEFVEAHKTCLNDLMYFPTRDAYGLSSVAGNMEKLAALQNEFDNVKKRMEDDTKKAQRLEQKIKLLTHGYQMRAGKLWTQIEATFKQMDTAGTELECFQALQKQEQLAASHRINGLWEEVQKQKELEQTLQSRYGDLIAEQERIQSLINEYRVQAKIQEEIAAKNHALELAEAEIK* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10279103 10296477 + Vvi14g605 Vvi14g605 775672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g605 322 MobiDBLite consensus disorder prediction 84 100 - -
Vvi14g605 322 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 309 - -
Vvi14g605 322 Coils Coil 174 208 - -
Vvi14g605 322 MobiDBLite consensus disorder prediction 84 115 - -
Vvi14g605 322 PANTHER - 1 309 - -
Vvi14g605 322 Coils Coil 2 22 - -
Vvi14g605 322 Coils Coil 300 320 - -
Vvi14g605 322 Pfam pre-mRNA splicing factor component 1 147 IPR021786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g605 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - vvi:100243262 599.742
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g605 Blo10g00270 . . . Bpe11g01310 . Bma13g00410 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00782 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g03418 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi14g604 . 1 295 MYB-Related Transcription Factor Family AT1G09770 85.4 2.3e-145 513.5
Vvi14g605 . 1 314 MYB-Related Transcription Factor Family AT1G09770 59.2 5.5e-91 332.8
Vvi17g236 . 182 658 MYB-Related Transcription Factor Family AT3G18100 57.2 1.3e-151 533.9
Vvi17g236 . 182 658 MYB-Related Transcription Factor Family AT3G18100 57.2 1.3e-151 533.9
Vvi14g604 . 1 295 MYB-Related Transcription Factor Family AT1G09770 85.4 2.3e-145 513.5
Vvi14g605 . 1 314 MYB-Related Transcription Factor Family AT1G09770 59.2 5.5e-91 332.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49