Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g610 ATGGGGACAGAACTTATTAGAGCTTGTGTTAAGGAAGAGAATCTTGATGTTCCACCAGGGTTTGAGTCACTAACATCTTTCACCTTGAAGCGGGTAGAAGACAATGAAATCACGACTCCTTGCTTGGCATCCACGAGTGGTTCTGAATCACAGTCGATCAAGATGGAAACTGAGTTTGACATTAGTGATGCTGCAAACATATCGAGGTCCCTTAGGCGTAGACCATGGATAAACTATGGTCAATTTGATAATAGTTCAGATGATGAGTCTGATTCTGAACATCTTAACCAAAATCTTCCTTTCAGGCGGCCTTGTCTTCCCAAAGGGGTTATCCGTGGATGTTTAGAGTGCATTCACTGCCAGAAGGTTACTGCAAGATGGTGTCCAGAAGATGCTTGTAGACCTGATCTTGAGGAGGCTCCTGTATTCTACCCAAGTGAAGAGGAGTTTGAAGACACTTTAAAATACATAGCAAGCATACGATCAAGAGCAGAACCATATGGAATTTGCCGAATTGTTCCTCCATCCTCTTGGAAGCCTCCCTGTCCTCTCAAGGAGAAAAACATTTGGGAGGGTTCTAAGTTTGCTACAAGAATACAGAGGGTGGACAAACTTCAGAACCGGGATTCAATGAGAAAGATGCCGAGGGTCCAAAACCAAACAAGGAGGAAAAGGCGAAGATTTGGATCATGTGATGGGGAGACTTTTGGGTTTGAACCTGGTCCAGAGTTTACATTGGATGCATTTCAGAAATATGCAGATGATTTCAGGGCTCAGTACTTCAGCAAGAATGGAAATGCTACTGATTTGAGAGTGGAGAATATTGAGGGTGAATATTGGCGGATTGTAGAGAAACCTACTGAAGAAATTGAGGTGCTTTATGGGGCTGACCTGGAAACTGGGGATTTTGGCAGTGGGTTTCCCAAAGTTTCTAATCCTGTTGGTTCTACCTCAGATGAACGATATACAAAGTCAGGCTGGAACTTGAATAACTTTCCTAGGCTACCTGGCTCTGTTCTCGCTTTTGAAAGTGGTGATATATCTGGAGTATTGGTACCATGGTTGTATATAGGAATGTGCTTTTCCTCGTTCTGTTGGCATGTTGAAGATCATCACTTATATTCGTTGAACTACATGCACTGGGGTGCTCCAAAAATTTGGTATGGTGTCCCAGGGCAAGATGCCCTTAAATTGGAGGCTGCTATGCGAAAGCGTTTACCGGATCTATTTGAGGAACAACCTGATTTACTTCATAAGCTGGTCACCCAACTTTCGCCCTCCATTGTGAAATTTGAGGGGGTACCTGTCTATCGTTGCGTTCAGAATCCTGGAGAGTTTGTTCTGACTTTTCCTCGAGCTTACCATTCAGGGTTCAACTGTGGCTTCAATTGTGCTGAGGCTGTAAATGTAGCTCCTGTTGACTGGTTGCCCCATGGACAGAATGCCATAGAACTTTATCGTGAGCAGGGACGGAAGACATCCATTTCCCATGATAAACTGTTGCTTGGGGCAGCGAGGGAAGCGGTGAGAGCTAATTGGGAACTTAATTTATTGAAGAAGAATACTTTGGATAACTTAAGATGGAAACAGGTCTGTGGAAAGGATGGAATCTTAGCAAAAACGCTCAAGGCACGTGTTGAGACAGAGCATACGAGGAGGGAATATCTTTGCGGTTCTTCACGGGCATTGAAGATGGAGGCTAATTTTGATGCCATCAACGAGAGGGAATGCATTGTATGCCTCTTTGATTTGCATCTGTCAGCAGCAGGTTGTCACTGTTCTCCAGATAGATATGCATGCCTAAATCATGCAAAGCAGTTGTGTTCTTGTGCTTGGAATACCAAATTTTTCCTCTTTCGTTATGACATCAGTGAATTAAATATCCTTGTTGAAGCTTTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAGACTAGATCTTGGTCTAGCCCTGAGTTCTTACATTTCCAAAGACAATTTGCAAATTCCTGGGCTTATTGGTAAATTATCTCAGTCCTCGGAAGGAACAGTACTGAATGAGCAGAATTCTAAACCTGTATCATCCTTAAAAAAGGTAGGAGGGGCAGAAAATGCTACTGCTTTATTGGATTTGGAAGGCAGGAAGGTTCCCAGTTCAAGAAACCGAATGGGAAATCAGAGGTTTCAGTTCACGAAGGAAGAATCTGTACTTTCAGCTCCTAGTTTAGGAACCCCAGTTTGTCATCCCTCTCAAGAAGACATGTATAATACTGAAAACTTGGCTTCAGTGAAATCTGAATTGGAGAGGAATACGTTTCCAGGGCATGGTAATGTTATACTTCTCAGTGACGATGAGGGTGAGGAGCTGAAGAAGCCAGTTCTAGATATTGCTAAAGAAACTCCTTTTGCTAAGCATTCAGAATTTTTTGAGAGGCTAACAGATTCTGATGCTAAAGTGAATACCTGTAATTATGTTAAAGATTCAGTTTTAACCACCCCCGCAACTAATGCTGCAGTATTGGGTGAAAGAAATGCTATTTCCTTACTTCATGGTGAAATGAAGAATTGTTCTACTAGTATAGATTCTGACAGAAATGCTCTGTACTTGTCGACTACAAGAGAGAACAGTGATTTTAATGTGGTAAATGCTGGAAGTTACCTTCAGCATCCGCTGCCACATGTTGGCGGAAAACCTAATGGTGAGGATAACAATGACAAGGTAGGACCTGCTGCTGGCCCAAAGTTAATAGACAATGCTAGAACCATTGCAGGAAACCCATCTTGCAGTCAAAACAATTTGGATAGATATTTCCGCCAGAAGGGACCTCGCATTGCAAAGGTTGTGCGAAGGATCAACTGCATAGTTGAGCCTCTGGAATTTGGAGTTGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAATTTTTCCCAAGGGGTTTCGAAGTCGGGTTAAATACATAAGTGTTTTGGATCCAACAAATATGTCTTACTATGTCTCAGAAATTCTGGATGCAGGATTAGCTGGACCTCTGTTTATGGTTTCCTTGGAGCATTATCCAAGTGAGGTATTCGTCCATGTTTCTGCTGCCAGATGCTGGGAAATGGTGAGAGAGAGAGTCAATCAAGAGATCACGAAGCAACATAAGTTGGGAAGAATGCCACTTCCTCCTTTGCAGCCTCCCGGGAGTCTTGATGGCCTAGAAATGTTTGGTTTTTCTTCACCCACAATCATGCAGGCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGAGTACTGGAACTCTCGTCCCTTGATTGCACAACATTCTCAATTAGAAGGTAGTGTTGGAAACCTCCATCGGATGCCTGAGGAACAAAATTATCAGTATGGCCAGAGTAACCATCCGTTTCCGGTTGGAGTTGACACAATACTGAGGGGCCTATTCATGAAAGCAAACCCTGAAGAATTACACTCACTGTATAGCATTTTAAATGACAACAGTAGGCCAACTGGTGATGGTGGGCTGGTGACTCGGCTTCTGAGTGAAGAGATTCACAAGCGGCCTAGGTGA 3537 43.26 MGTELIRACVKEENLDVPPGFESLTSFTLKRVEDNEITTPCLASTSGSESQSIKMETEFDISDAANISRSLRRRPWINYGQFDNSSDDESDSEHLNQNLPFRRPCLPKGVIRGCLECIHCQKVTARWCPEDACRPDLEEAPVFYPSEEEFEDTLKYIASIRSRAEPYGICRIVPPSSWKPPCPLKEKNIWEGSKFATRIQRVDKLQNRDSMRKMPRVQNQTRRKRRRFGSCDGETFGFEPGPEFTLDAFQKYADDFRAQYFSKNGNATDLRVENIEGEYWRIVEKPTEEIEVLYGADLETGDFGSGFPKVSNPVGSTSDERYTKSGWNLNNFPRLPGSVLAFESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVPGQDALKLEAAMRKRLPDLFEEQPDLLHKLVTQLSPSIVKFEGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQNAIELYREQGRKTSISHDKLLLGAAREAVRANWELNLLKKNTLDNLRWKQVCGKDGILAKTLKARVETEHTRREYLCGSSRALKMEANFDAINERECIVCLFDLHLSAAGCHCSPDRYACLNHAKQLCSCAWNTKFFLFRYDISELNILVEALEGKLSAVYRWARLDLGLALSSYISKDNLQIPGLIGKLSQSSEGTVLNEQNSKPVSSLKKVGGAENATALLDLEGRKVPSSRNRMGNQRFQFTKEESVLSAPSLGTPVCHPSQEDMYNTENLASVKSELERNTFPGHGNVILLSDDEGEELKKPVLDIAKETPFAKHSEFFERLTDSDAKVNTCNYVKDSVLTTPATNAAVLGERNAISLLHGEMKNCSTSIDSDRNALYLSTTRENSDFNVVNAGSYLQHPLPHVGGKPNGEDNNDKVGPAAGPKLIDNARTIAGNPSCSQNNLDRYFRQKGPRIAKVVRRINCIVEPLEFGVVISGKLWCNRQAIFPKGFRSRVKYISVLDPTNMSYYVSEILDAGLAGPLFMVSLEHYPSEVFVHVSAARCWEMVRERVNQEITKQHKLGRMPLPPLQPPGSLDGLEMFGFSSPTIMQAVEAMDRNRVCTEYWNSRPLIAQHSQLEGSVGNLHRMPEEQNYQYGQSNHPFPVGVDTILRGLFMKANPEELHSLYSILNDNSRPTGDGGLVTRLLSEEIHKRPR* 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10528573 10546325 - Vvi14g610 Vvi14g610 775677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g610 1178 PANTHER JUMONJI 14-RELATED 63 675 - -
Vvi14g610 1178 PANTHER JUMONJI 14-RELATED 763 1176 - -
Vvi14g610 1178 ProSiteProfiles FYR domain FYRC motif profile. 1001 1091 IPR003889 GO:0005634
Vvi14g610 1178 SMART fyrn_3 955 999 IPR003888 GO:0005634
Vvi14g610 1178 SMART cupin_9 321 487 IPR003347 -
Vvi14g610 1178 SMART fyrc_3 1005 1102 IPR003889 GO:0005634
Vvi14g610 1178 Pfam F/Y-rich N-terminus 954 996 IPR003888 GO:0005634
Vvi14g610 1178 ProSiteProfiles JmjN domain profile. 140 181 IPR003349 -
Vvi14g610 1178 Pfam JmjC domain, hydroxylase 354 470 IPR003347 -
Vvi14g610 1178 Gene3D - 949 1085 - -
Vvi14g610 1178 ProSiteProfiles FYR domain FYRN motif profile. 941 999 IPR003888 GO:0005634
Vvi14g610 1178 SMART JmjN_1 139 180 IPR003349 -
Vvi14g610 1178 Pfam C5HC2 zinc finger 577 627 IPR004198 -
Vvi14g610 1178 Pfam F/Y rich C-terminus 1003 1089 IPR003889 GO:0005634
Vvi14g610 1178 PANTHER LYSINE-SPECIFIC DEMETHYLASE 63 675 - -
Vvi14g610 1178 PANTHER LYSINE-SPECIFIC DEMETHYLASE 763 1176 - -
Vvi14g610 1178 ProSiteProfiles JmjC domain profile. 321 487 IPR003347 -
Vvi14g610 1178 SUPERFAMILY Clavaminate synthase-like 287 514 - -
Vvi14g610 1178 Pfam jmjN domain 141 174 IPR003349 -
Vvi14g610 1178 Gene3D Cupin 125 471 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14014 PF02373 JmjC 2.90E-45 CL0029 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g610 - - vvi:100243365 2340.07