Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g610 ATGGGGACAGAACTTATTAGAGCTTGTGTTAAGGAAGAGAATCTTGATGTTCCACCAGGGTTTGAGTCACTAACATCTTTCACCTTGAAGCGGGTAGAAGACAATGAAATCACGACTCCTTGCTTGGCATCCACGAGTGGTTCTGAATCACAGTCGATCAAGATGGAAACTGAGTTTGACATTAGTGATGCTGCAAACATATCGAGGTCCCTTAGGCGTAGACCATGGATAAACTATGGTCAATTTGATAATAGTTCAGATGATGAGTCTGATTCTGAACATCTTAACCAAAATCTTCCTTTCAGGCGGCCTTGTCTTCCCAAAGGGGTTATCCGTGGATGTTTAGAGTGCATTCACTGCCAGAAGGTTACTGCAAGATGGTGTCCAGAAGATGCTTGTAGACCTGATCTTGAGGAGGCTCCTGTATTCTACCCAAGTGAAGAGGAGTTTGAAGACACTTTAAAATACATAGCAAGCATACGATCAAGAGCAGAACCATATGGAATTTGCCGAATTGTTCCTCCATCCTCTTGGAAGCCTCCCTGTCCTCTCAAGGAGAAAAACATTTGGGAGGGTTCTAAGTTTGCTACAAGAATACAGAGGGTGGACAAACTTCAGAACCGGGATTCAATGAGAAAGATGCCGAGGGTCCAAAACCAAACAAGGAGGAAAAGGCGAAGATTTGGATCATGTGATGGGGAGACTTTTGGGTTTGAACCTGGTCCAGAGTTTACATTGGATGCATTTCAGAAATATGCAGATGATTTCAGGGCTCAGTACTTCAGCAAGAATGGAAATGCTACTGATTTGAGAGTGGAGAATATTGAGGGTGAATATTGGCGGATTGTAGAGAAACCTACTGAAGAAATTGAGGTGCTTTATGGGGCTGACCTGGAAACTGGGGATTTTGGCAGTGGGTTTCCCAAAGTTTCTAATCCTGTTGGTTCTACCTCAGATGAACGATATACAAAGTCAGGCTGGAACTTGAATAACTTTCCTAGGCTACCTGGCTCTGTTCTCGCTTTTGAAAGTGGTGATATATCTGGAGTATTGGTACCATGGTTGTATATAGGAATGTGCTTTTCCTCGTTCTGTTGGCATGTTGAAGATCATCACTTATATTCGTTGAACTACATGCACTGGGGTGCTCCAAAAATTTGGTATGGTGTCCCAGGGCAAGATGCCCTTAAATTGGAGGCTGCTATGCGAAAGCGTTTACCGGATCTATTTGAGGAACAACCTGATTTACTTCATAAGCTGGTCACCCAACTTTCGCCCTCCATTGTGAAATTTGAGGGGGTACCTGTCTATCGTTGCGTTCAGAATCCTGGAGAGTTTGTTCTGACTTTTCCTCGAGCTTACCATTCAGGGTTCAACTGTGGCTTCAATTGTGCTGAGGCTGTAAATGTAGCTCCTGTTGACTGGTTGCCCCATGGACAGAATGCCATAGAACTTTATCGTGAGCAGGGACGGAAGACATCCATTTCCCATGATAAACTGTTGCTTGGGGCAGCGAGGGAAGCGGTGAGAGCTAATTGGGAACTTAATTTATTGAAGAAGAATACTTTGGATAACTTAAGATGGAAACAGGTCTGTGGAAAGGATGGAATCTTAGCAAAAACGCTCAAGGCACGTGTTGAGACAGAGCATACGAGGAGGGAATATCTTTGCGGTTCTTCACGGGCATTGAAGATGGAGGCTAATTTTGATGCCATCAACGAGAGGGAATGCATTGTATGCCTCTTTGATTTGCATCTGTCAGCAGCAGGTTGTCACTGTTCTCCAGATAGATATGCATGCCTAAATCATGCAAAGCAGTTGTGTTCTTGTGCTTGGAATACCAAATTTTTCCTCTTTCGTTATGACATCAGTGAATTAAATATCCTTGTTGAAGCTTTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAGACTAGATCTTGGTCTAGCCCTGAGTTCTTACATTTCCAAAGACAATTTGCAAATTCCTGGGCTTATTGGTAAATTATCTCAGTCCTCGGAAGGAACAGTACTGAATGAGCAGAATTCTAAACCTGTATCATCCTTAAAAAAGGTAGGAGGGGCAGAAAATGCTACTGCTTTATTGGATTTGGAAGGCAGGAAGGTTCCCAGTTCAAGAAACCGAATGGGAAATCAGAGGTTTCAGTTCACGAAGGAAGAATCTGTACTTTCAGCTCCTAGTTTAGGAACCCCAGTTTGTCATCCCTCTCAAGAAGACATGTATAATACTGAAAACTTGGCTTCAGTGAAATCTGAATTGGAGAGGAATACGTTTCCAGGGCATGGTAATGTTATACTTCTCAGTGACGATGAGGGTGAGGAGCTGAAGAAGCCAGTTCTAGATATTGCTAAAGAAACTCCTTTTGCTAAGCATTCAGAATTTTTTGAGAGGCTAACAGATTCTGATGCTAAAGTGAATACCTGTAATTATGTTAAAGATTCAGTTTTAACCACCCCCGCAACTAATGCTGCAGTATTGGGTGAAAGAAATGCTATTTCCTTACTTCATGGTGAAATGAAGAATTGTTCTACTAGTATAGATTCTGACAGAAATGCTCTGTACTTGTCGACTACAAGAGAGAACAGTGATTTTAATGTGGTAAATGCTGGAAGTTACCTTCAGCATCCGCTGCCACATGTTGGCGGAAAACCTAATGGTGAGGATAACAATGACAAGGTAGGACCTGCTGCTGGCCCAAAGTTAATAGACAATGCTAGAACCATTGCAGGAAACCCATCTTGCAGTCAAAACAATTTGGATAGATATTTCCGCCAGAAGGGACCTCGCATTGCAAAGGTTGTGCGAAGGATCAACTGCATAGTTGAGCCTCTGGAATTTGGAGTTGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAATTTTTCCCAAGGGGTTTCGAAGTCGGGTTAAATACATAAGTGTTTTGGATCCAACAAATATGTCTTACTATGTCTCAGAAATTCTGGATGCAGGATTAGCTGGACCTCTGTTTATGGTTTCCTTGGAGCATTATCCAAGTGAGGTATTCGTCCATGTTTCTGCTGCCAGATGCTGGGAAATGGTGAGAGAGAGAGTCAATCAAGAGATCACGAAGCAACATAAGTTGGGAAGAATGCCACTTCCTCCTTTGCAGCCTCCCGGGAGTCTTGATGGCCTAGAAATGTTTGGTTTTTCTTCACCCACAATCATGCAGGCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGAGTACTGGAACTCTCGTCCCTTGATTGCACAACATTCTCAATTAGAAGGTAGTGTTGGAAACCTCCATCGGATGCCTGAGGAACAAAATTATCAGTATGGCCAGAGTAACCATCCGTTTCCGGTTGGAGTTGACACAATACTGAGGGGCCTATTCATGAAAGCAAACCCTGAAGAATTACACTCACTGTATAGCATTTTAAATGACAACAGTAGGCCAACTGGTGATGGTGGGCTGGTGACTCGGCTTCTGAGTGAAGAGATTCACAAGCGGCCTAGGTGA 3537 43.26 MGTELIRACVKEENLDVPPGFESLTSFTLKRVEDNEITTPCLASTSGSESQSIKMETEFDISDAANISRSLRRRPWINYGQFDNSSDDESDSEHLNQNLPFRRPCLPKGVIRGCLECIHCQKVTARWCPEDACRPDLEEAPVFYPSEEEFEDTLKYIASIRSRAEPYGICRIVPPSSWKPPCPLKEKNIWEGSKFATRIQRVDKLQNRDSMRKMPRVQNQTRRKRRRFGSCDGETFGFEPGPEFTLDAFQKYADDFRAQYFSKNGNATDLRVENIEGEYWRIVEKPTEEIEVLYGADLETGDFGSGFPKVSNPVGSTSDERYTKSGWNLNNFPRLPGSVLAFESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVPGQDALKLEAAMRKRLPDLFEEQPDLLHKLVTQLSPSIVKFEGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQNAIELYREQGRKTSISHDKLLLGAAREAVRANWELNLLKKNTLDNLRWKQVCGKDGILAKTLKARVETEHTRREYLCGSSRALKMEANFDAINERECIVCLFDLHLSAAGCHCSPDRYACLNHAKQLCSCAWNTKFFLFRYDISELNILVEALEGKLSAVYRWARLDLGLALSSYISKDNLQIPGLIGKLSQSSEGTVLNEQNSKPVSSLKKVGGAENATALLDLEGRKVPSSRNRMGNQRFQFTKEESVLSAPSLGTPVCHPSQEDMYNTENLASVKSELERNTFPGHGNVILLSDDEGEELKKPVLDIAKETPFAKHSEFFERLTDSDAKVNTCNYVKDSVLTTPATNAAVLGERNAISLLHGEMKNCSTSIDSDRNALYLSTTRENSDFNVVNAGSYLQHPLPHVGGKPNGEDNNDKVGPAAGPKLIDNARTIAGNPSCSQNNLDRYFRQKGPRIAKVVRRINCIVEPLEFGVVISGKLWCNRQAIFPKGFRSRVKYISVLDPTNMSYYVSEILDAGLAGPLFMVSLEHYPSEVFVHVSAARCWEMVRERVNQEITKQHKLGRMPLPPLQPPGSLDGLEMFGFSSPTIMQAVEAMDRNRVCTEYWNSRPLIAQHSQLEGSVGNLHRMPEEQNYQYGQSNHPFPVGVDTILRGLFMKANPEELHSLYSILNDNSRPTGDGGLVTRLLSEEIHKRPR* 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10528573 10546325 - Vvi14g610 Vvi14g610 775677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g610 1178 PANTHER JUMONJI 14-RELATED 63 675 - -
Vvi14g610 1178 PANTHER JUMONJI 14-RELATED 763 1176 - -
Vvi14g610 1178 ProSiteProfiles FYR domain FYRC motif profile. 1001 1091 IPR003889 GO:0005634
Vvi14g610 1178 SMART fyrn_3 955 999 IPR003888 GO:0005634
Vvi14g610 1178 SMART cupin_9 321 487 IPR003347 -
Vvi14g610 1178 SMART fyrc_3 1005 1102 IPR003889 GO:0005634
Vvi14g610 1178 Pfam F/Y-rich N-terminus 954 996 IPR003888 GO:0005634
Vvi14g610 1178 ProSiteProfiles JmjN domain profile. 140 181 IPR003349 -
Vvi14g610 1178 Pfam JmjC domain, hydroxylase 354 470 IPR003347 -
Vvi14g610 1178 Gene3D - 949 1085 - -
Vvi14g610 1178 ProSiteProfiles FYR domain FYRN motif profile. 941 999 IPR003888 GO:0005634
Vvi14g610 1178 SMART JmjN_1 139 180 IPR003349 -
Vvi14g610 1178 Pfam C5HC2 zinc finger 577 627 IPR004198 -
Vvi14g610 1178 Pfam F/Y rich C-terminus 1003 1089 IPR003889 GO:0005634
Vvi14g610 1178 PANTHER LYSINE-SPECIFIC DEMETHYLASE 63 675 - -
Vvi14g610 1178 PANTHER LYSINE-SPECIFIC DEMETHYLASE 763 1176 - -
Vvi14g610 1178 ProSiteProfiles JmjC domain profile. 321 487 IPR003347 -
Vvi14g610 1178 SUPERFAMILY Clavaminate synthase-like 287 514 - -
Vvi14g610 1178 Pfam jmjN domain 141 174 IPR003349 -
Vvi14g610 1178 Gene3D Cupin 125 471 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g610 - - - vvi:100243365 2340.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g610 Blo10g00272 Blo11g00440 . . . Bpe09g00662 Bma13g00412 . . . . Cma12g00959 . Car12g00919 . Cpe07g00798 . . . . . . . . . . . . . . . Cone10ag0643 Cone3ag0673 . . . Csa02g00757 . Cme05g01133 . . . . . . . . . Cmo05g00802 Cmo12g00962 . . . . . . Bhi06g01091 . . . . . . Cla11g01036 Cam11g1090 . Cco11g1094 Clacu11g1252 Cmu11g1088 Cre11g1512 . . Chy05g00772 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi14g610 . 1 1176 JUMONJI Transcription Factor Family AT1G08620 56.2 0.0e+00 1264.6
Vvi7g573 . 31 584 JUMONJI Transcription Factor Family AT1G08620 57.6 4.5e-203 705.7
Vvi10g644 . 79 882 JUMONJI Transcription Factor Family AT1G30810 57.8 1.0e-270 929.9
Vvi7g573 . 49 572 JUMONJI Transcription Factor Family AT1G30810 51.0 2.4e-160 563.1
Vvi10g644 . 111 882 JUMONJI Transcription Factor Family AT2G34880 53.8 2.1e-241 832.4
Vvi10g644 . 142 946 JUMONJI Transcription Factor Family AT4G20400 53.2 1.2e-256 883.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14014 PF02373 JmjC 2.90E-45 CL0029 Vvi TR