Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g670 ATGACAAATCCGATTTCTCCACAAGCACATCAATTGGCGTCCAACAATGGAACTGTTGGCTACATGCTTTCTAGCGGTTCCCAAAATTCTTTGTTCATTCCTCAGTCATCAACAAATGGAGTATCTTTACCACCAATCAGTTCTTCTGGCATAGAAATACAATCTACACCATCAGTTACTTTCTCCCGAGAGAGGAAAGAAAATTCCTGGTGTACAGATTCACTTAAGGATTTTCTTGATTTTCCTGAAAATGTTCCTATCCAGAATAATAATCAGGTAGAAGGCAGTGGTGGTGGCATGTCATATGAGGACTGTGCTAAGACAACTGATTGGCCGGATTGGGCAGATCAGTTTCTTAATGATGATGATTCTTTGGAGCCTAATTGGAATGGGCTTCTCATTGATGTTGATGTACCAGATCCTGAGTCAAAGGTACTGAAACCATCTTCCTCTGTCTTGACACACCAGTCTGAAATCTGTCAGCACCATCCAGCACAATCTGGAGAAATTTCTGCCGTTCCCAACTCTTTGTCCCCTGCACCCTCATCCAAGCCTCGCATGCGCTGGACACCAGAAATGCATGAGGCCTTTGTGGAGGCTGTCAAACAGCTTGGTGGCAGTGAACGGGCGACTCCAAAGGGAATCTTGAAGCTTATGAATGTTGAAGGTCTGACCATCTATCATGTAAAAAGCCATCTGCAGAAATACAGAACAGCCAGATACAAACCAAAGCTGTCAGAAGGAACTTCAGACAAAAATTTAACTTCAATTGGAGAAATTACGTCACTAGACTTAAAAATGAGCATGGGAATCACCGAAGCATTGCGGCTGCAAATGGAAGTTCAAAAGCAGCTCCACGAACAACTTGAGATTCAGAGAAATTTGCAGTTGCGAATTGAAGAGCAGGCAAAGCACCTTCAAATGATGTTTGAGAAACAGGGAAAGATGGAAGACAAGAAGTTGAAGGTCTCTTCATCCATCCCAGATGAACCCTCTTCTCCAATATCAAATGTGATGCAGCCTTCCCCTGTCAATCACACATCAAAAGTCTCAGAGCAGCCTCATGTTGCATCAGGATTTGATGCTGAAGAAAGTTCTCAGAATGTGGAACAGAAGCAAAAGGCACCTGAAACCAGCGGTTGCGAGTTTATTAACCAAGATAATGGCATGTCCAGTACCCCACCCACAAAGCGAGCAAGAGCAGAAAACTTTTTGAGCTCATGA 1224 43.46 MTNPISPQAHQLASNNGTVGYMLSSGSQNSLFIPQSSTNGVSLPPISSSGIEIQSTPSVTFSRERKENSWCTDSLKDFLDFPENVPIQNNNQVEGSGGGMSYEDCAKTTDWPDWADQFLNDDDSLEPNWNGLLIDVDVPDPESKVLKPSSSVLTHQSEICQHHPAQSGEISAVPNSLSPAPSSKPRMRWTPEMHEAFVEAVKQLGGSERATPKGILKLMNVEGLTIYHVKSHLQKYRTARYKPKLSEGTSDKNLTSIGEITSLDLKMSMGITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQAKHLQMMFEKQGKMEDKKLKVSSSIPDEPSSPISNVMQPSPVNHTSKVSEQPHVASGFDAEESSQNVEQKQKAPETSGCEFINQDNGMSSTPPTKRARAENFLSS* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12525262 12550997 - Vvi14g670 Vvi14g670 775737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g670 407 MobiDBLite consensus disorder prediction 314 407 - -
Vvi14g670 407 SUPERFAMILY Homeodomain-like 182 238 IPR009057 -
Vvi14g670 407 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 402 IPR044848 GO:0003700
Vvi14g670 407 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 1 402 - -
Vvi14g670 407 Coils Coil 272 292 - -
Vvi14g670 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 241 IPR017930 -
Vvi14g670 407 Gene3D - 183 242 - -
Vvi14g670 407 MobiDBLite consensus disorder prediction 165 183 - -
Vvi14g670 407 MobiDBLite consensus disorder prediction 326 407 - -
Vvi14g670 407 Pfam MYB-CC type transfactor, LHEQLE motif 269 316 IPR025756 -
Vvi14g670 407 MobiDBLite consensus disorder prediction 165 186 - -
Vvi14g670 407 Pfam Myb-like DNA-binding domain 186 237 IPR001005 -
Vvi14g670 407 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 184 238 IPR006447 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14015 PF00249 Myb_DNA-binding 4.00E-08 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g670 - - vvi:100240786 803.127