Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi14g670 | ATGACAAATCCGATTTCTCCACAAGCACATCAATTGGCGTCCAACAATGGAACTGTTGGCTACATGCTTTCTAGCGGTTCCCAAAATTCTTTGTTCATTCCTCAGTCATCAACAAATGGAGTATCTTTACCACCAATCAGTTCTTCTGGCATAGAAATACAATCTACACCATCAGTTACTTTCTCCCGAGAGAGGAAAGAAAATTCCTGGTGTACAGATTCACTTAAGGATTTTCTTGATTTTCCTGAAAATGTTCCTATCCAGAATAATAATCAGGTAGAAGGCAGTGGTGGTGGCATGTCATATGAGGACTGTGCTAAGACAACTGATTGGCCGGATTGGGCAGATCAGTTTCTTAATGATGATGATTCTTTGGAGCCTAATTGGAATGGGCTTCTCATTGATGTTGATGTACCAGATCCTGAGTCAAAGGTACTGAAACCATCTTCCTCTGTCTTGACACACCAGTCTGAAATCTGTCAGCACCATCCAGCACAATCTGGAGAAATTTCTGCCGTTCCCAACTCTTTGTCCCCTGCACCCTCATCCAAGCCTCGCATGCGCTGGACACCAGAAATGCATGAGGCCTTTGTGGAGGCTGTCAAACAGCTTGGTGGCAGTGAACGGGCGACTCCAAAGGGAATCTTGAAGCTTATGAATGTTGAAGGTCTGACCATCTATCATGTAAAAAGCCATCTGCAGAAATACAGAACAGCCAGATACAAACCAAAGCTGTCAGAAGGAACTTCAGACAAAAATTTAACTTCAATTGGAGAAATTACGTCACTAGACTTAAAAATGAGCATGGGAATCACCGAAGCATTGCGGCTGCAAATGGAAGTTCAAAAGCAGCTCCACGAACAACTTGAGATTCAGAGAAATTTGCAGTTGCGAATTGAAGAGCAGGCAAAGCACCTTCAAATGATGTTTGAGAAACAGGGAAAGATGGAAGACAAGAAGTTGAAGGTCTCTTCATCCATCCCAGATGAACCCTCTTCTCCAATATCAAATGTGATGCAGCCTTCCCCTGTCAATCACACATCAAAAGTCTCAGAGCAGCCTCATGTTGCATCAGGATTTGATGCTGAAGAAAGTTCTCAGAATGTGGAACAGAAGCAAAAGGCACCTGAAACCAGCGGTTGCGAGTTTATTAACCAAGATAATGGCATGTCCAGTACCCCACCCACAAAGCGAGCAAGAGCAGAAAACTTTTTGAGCTCATGA | 1224 | 43.46 | MTNPISPQAHQLASNNGTVGYMLSSGSQNSLFIPQSSTNGVSLPPISSSGIEIQSTPSVTFSRERKENSWCTDSLKDFLDFPENVPIQNNNQVEGSGGGMSYEDCAKTTDWPDWADQFLNDDDSLEPNWNGLLIDVDVPDPESKVLKPSSSVLTHQSEICQHHPAQSGEISAVPNSLSPAPSSKPRMRWTPEMHEAFVEAVKQLGGSERATPKGILKLMNVEGLTIYHVKSHLQKYRTARYKPKLSEGTSDKNLTSIGEITSLDLKMSMGITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQAKHLQMMFEKQGKMEDKKLKVSSSIPDEPSSPISNVMQPSPVNHTSKVSEQPHVASGFDAEESSQNVEQKQKAPETSGCEFINQDNGMSSTPPTKRARAENFLSS* | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 12525262 | 12550997 | - | Vvi14g670 | Vvi14g670 | 775737 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi14g670 | 407 | MobiDBLite | consensus disorder prediction | 314 | 407 | - | - | |
Vvi14g670 | 407 | SUPERFAMILY | Homeodomain-like | 182 | 238 | IPR009057 | - | |
Vvi14g670 | 407 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE | 1 | 402 | IPR044848 | GO:0003700 | |
Vvi14g670 | 407 | PANTHER | PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 | 1 | 402 | - | - | |
Vvi14g670 | 407 | Coils | Coil | 272 | 292 | - | - | |
Vvi14g670 | 407 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 183 | 241 | IPR017930 | - | |
Vvi14g670 | 407 | Gene3D | - | 183 | 242 | - | - | |
Vvi14g670 | 407 | MobiDBLite | consensus disorder prediction | 165 | 183 | - | - | |
Vvi14g670 | 407 | MobiDBLite | consensus disorder prediction | 326 | 407 | - | - | |
Vvi14g670 | 407 | Pfam | MYB-CC type transfactor, LHEQLE motif | 269 | 316 | IPR025756 | - | |
Vvi14g670 | 407 | MobiDBLite | consensus disorder prediction | 165 | 186 | - | - | |
Vvi14g670 | 407 | Pfam | Myb-like DNA-binding domain | 186 | 237 | IPR001005 | - | |
Vvi14g670 | 407 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 184 | 238 | IPR006447 | GO:0003677 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14015 | PF00249 | Myb_DNA-binding | 4.00E-08 | CL0123 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi14g670 | - | - | vvi:100240786 | 803.127 |