Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi14g683 | ATGATGAATGATTGGTTCTCTGTGTCTCCCATCCCTACTAGACAGAACAGCCGCAATGCATCGACAAATGAAATCTTCCTGGGCACAAGACATGAAAGACAAAAGGGAAGAATTGAACCTGATGGAAGGTGGTACAGAACATGGACGAAGTTCATATTGTTATGGGCAGTGTACTCTTCATTTTTCACACCCATGGAATTTGGATTCTTCAGAGGATTGCCAGAGGACTTGGTCTTCCTGGACATTGCTGGCCAGATTGCTTTTCTTATCGACATTGTGCTCCGATTCTTCCTTGCCTACAGGGATGCCCACACTTACCGCATGGTCTACAAGCGCACATCTATTGCACTTAGGTATATGAAATCTAGTTTTGTCATTGATTTAATTTGCTGTTTGCCTTGGGATATTATTTACAAGGCTTGTGGGAGAAAAGAAGAAGTGAGGTACCTCTTATGGATTAGGTTGATTAGGGTGTGCAAAGTCACAGATTTTTTCCAAAACTTGGAAAAGGACACACGGATCAATTATATGTTTACCAGGATTCTGAAACTTATTGCTGTTGAACTCTATTGCACGCATACAGCAGCTTGTGTCTTTTACTATTTGGCTACAACACTTCCCCAATCTGAAGAGGGGTACACATGGATTGGAAGTTTAAAGCTGGGGGACTACAGTTACTCTCACTTTAGAGAGATTGATATCTGGAAGCGGTACACAACATCTTTATATTTTGCAATCATCACAATGGCCACTGTTGGTTACGGGGATATACATGCTGTAAATCTGAGAGAAATGATTTTTGTCATGATTTATGTGTCTTTTGACATGATTCTTGGTGCTTACTTGATCGGTAACATGACAGCCTTAATAGTTAAAGGATCAAAAACTGAAAGATTTAGGGATAAGATGACTGATGTCATCAAATATATGAACAGAAACAGACTTGATAGGGACGTTCGCAATCAGATCAAAGGCCACCTACGCTTACAGTATGAGAGTGGCTACACTGAAGCTTCTGTTATTCAGGATCTTCCTATCTCTATTCGAGCTAAGATTGCCCAAACTTTATATAAGCCATTGGTTGAAAAGGTTTCTCTTTTTAGGGGATGCTCTTTGGAACTCATCAATCAAATTGTAATCAGAGTTCATGAGGAGTTTTTTCTTCCAGGTGAAGTGATAATGGAGCAGGGAAATGTGGTAGATCAACTTTATTTTGTCTGTCATGGAATGCTGGAAGAGATAGGCATTGGGGCAGATGGATCAGAAGAAACAGTTTTGCCTCTGCAACCTAACAGCTCCTTTGGAGAAATTTCAATTCTTTGCAACATTCCTCAACCATATACAGTTCGAGTTCTTGAATTGTGTAGGCTTCTGCGCCTTGATAAACAATCTTTTACAGATATTCTTGAAATATATTTTTATGATGGGCGGAGAATCTTGAACAACCTTCTAGAGGGAAAGGAATCAAATCTTCGTGTCAAGCAACTGGAGTCAGATATCACATTTCATATTGGTAGGCAAGAAGCTGAACTTGCTTTAAGGGTAAACAGTGCTTCTTATCATGGGGATCTATATCAGCTAAAGAGTTTGATTCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGATCACCTTTGCATCTTGCATCAGCAAGAGGATTTGAAGATATTGTAACTTTCCTTATACAAGAAGGTGTGGATGTCAATATTTCAGATAATTTTGGAAACACGCCCTTATTAGAAGCCATCAAGAATGCACATGATCGCGTTGCTTCTTTGCTTGTTAATAAAGGGGCCTTGCTGAAGATTGATGATGCTGGTGGTTTTCTGTGTGCGACCATTGCAAGGGGGGATTCAGATTTTCTTAAAAGGATTCTGTCCAATGGCATTGATCCAAACTCCAAAGACTATGATCACAGAACCCCACTTCATGTGGCTGCCTCAGAAGGGTTATATTTTATGGCAAAGTTGCTTTTAGAAGCCAGGGCTAGTGTATTCTCAAAGGACAGATGGGGAAACACCCCACTTGATGAAGGTTGGAAGTGTGGAAACAAGAATCTAATGAAGCTATTGGAAGATGCAAAAGTGGCTCAGCTTTCTGAATTTCCTGACTGCTCTAGAGAGATCACAGATAAAATGCACCCGAGGAAATGTACTGTGTTCCCTTTCCACCCATGGGATCCGAAAGAACATAAAAGGCCTGGCATCATGTTATGGGTCCCTCAAACCATTGAAGAGCTGATCAAGACTGCAACAGAGGGGCTACAATTTTCAAGTGAATCCTGTATATTATCAGAGGATGGAGGTAAAATTTTGGATGTAGACATGATAAGCGATGGTCAGAAGCTATATTTGTTATGTGAAACACTAGATATTTAG | 2385 | 40.38 | MMNDWFSVSPIPTRQNSRNASTNEIFLGTRHERQKGRIEPDGRWYRTWTKFILLWAVYSSFFTPMEFGFFRGLPEDLVFLDIAGQIAFLIDIVLRFFLAYRDAHTYRMVYKRTSIALRYMKSSFVIDLICCLPWDIIYKACGRKEEVRYLLWIRLIRVCKVTDFFQNLEKDTRINYMFTRILKLIAVELYCTHTAACVFYYLATTLPQSEEGYTWIGSLKLGDYSYSHFREIDIWKRYTTSLYFAIITMATVGYGDIHAVNLREMIFVMIYVSFDMILGAYLIGNMTALIVKGSKTERFRDKMTDVIKYMNRNRLDRDVRNQIKGHLRLQYESGYTEASVIQDLPISIRAKIAQTLYKPLVEKVSLFRGCSLELINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGMLEEIGIGADGSEETVLPLQPNSSFGEISILCNIPQPYTVRVLELCRLLRLDKQSFTDILEIYFYDGRRILNNLLEGKESNLRVKQLESDITFHIGRQEAELALRVNSASYHGDLYQLKSLIRAGADPNKTDYDGRSPLHLASARGFEDIVTFLIQEGVDVNISDNFGNTPLLEAIKNAHDRVASLLVNKGALLKIDDAGGFLCATIARGDSDFLKRILSNGIDPNSKDYDHRTPLHVAASEGLYFMAKLLLEARASVFSKDRWGNTPLDEGWKCGNKNLMKLLEDAKVAQLSEFPDCSREITDKMHPRKCTVFPFHPWDPKEHKRPGIMLWVPQTIEELIKTATEGLQFSSESCILSEDGGKILDVDMISDGQKLYLLCETLDI* | 795 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 13205170 | 13233138 | - | Vvi14g683 | Vvi14g683 | 775750 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi14g683 | 794 | ProSiteProfiles | Ankyrin repeat profile. | 576 | 608 | IPR002110 | GO:0005515 | |
| Vvi14g683 | 794 | ProSiteProfiles | Ankyrin repeat region circular profile. | 543 | 575 | - | - | |
| Vvi14g683 | 794 | Gene3D | Helix hairpin bin | 293 | 349 | - | - | |
| Vvi14g683 | 794 | Gene3D | - | 614 | 698 | IPR036770 | - | |
| Vvi14g683 | 794 | PANTHER | POTASSIUM CHANNEL SKOR-LIKE | 20 | 791 | - | - | |
| Vvi14g683 | 794 | Pfam | Ion transport protein | 46 | 291 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Vvi14g683 | 794 | Gene3D | - | 490 | 613 | IPR036770 | - | |
| Vvi14g683 | 794 | PANTHER | POTASSIUM CHANNEL AKT1 | 20 | 791 | IPR045319 | GO:0005249|GO:0006813 | |
| Vvi14g683 | 794 | ProSiteProfiles | Ankyrin repeat profile. | 543 | 575 | IPR002110 | GO:0005515 | |
| Vvi14g683 | 794 | ProSiteProfiles | KHA domain profile. | 719 | 794 | IPR021789 | - | |
| Vvi14g683 | 794 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 366 | 486 | IPR000595 | - | |
| Vvi14g683 | 794 | SUPERFAMILY | Voltage-gated potassium channels | 40 | 291 | - | - | |
| Vvi14g683 | 794 | PRINTS | EAG/ELK/ERG potassium channel family signature | 81 | 91 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Vvi14g683 | 794 | PRINTS | EAG/ELK/ERG potassium channel family signature | 190 | 200 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Vvi14g683 | 794 | PRINTS | EAG/ELK/ERG potassium channel family signature | 238 | 255 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Vvi14g683 | 794 | PRINTS | EAG/ELK/ERG potassium channel family signature | 282 | 291 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Vvi14g683 | 794 | PRINTS | EAG/ELK/ERG potassium channel family signature | 449 | 457 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Vvi14g683 | 794 | SMART | cnmp_10 | 366 | 484 | IPR000595 | - | |
| Vvi14g683 | 794 | ProSiteProfiles | Ankyrin repeat region circular profile. | 640 | 672 | - | - | |
| Vvi14g683 | 794 | Gene3D | Jelly Rolls | 350 | 489 | IPR014710 | - | |
| Vvi14g683 | 794 | SMART | ANK_2a | 673 | 703 | IPR002110 | GO:0005515 | |
| Vvi14g683 | 794 | SMART | ANK_2a | 510 | 539 | IPR002110 | GO:0005515 | |
| Vvi14g683 | 794 | SMART | ANK_2a | 606 | 636 | IPR002110 | GO:0005515 | |
| Vvi14g683 | 794 | SMART | ANK_2a | 543 | 572 | IPR002110 | GO:0005515 | |
| Vvi14g683 | 794 | SMART | ANK_2a | 576 | 605 | IPR002110 | GO:0005515 | |
| Vvi14g683 | 794 | SMART | ANK_2a | 640 | 669 | IPR002110 | GO:0005515 | |
| Vvi14g683 | 794 | Pfam | Ankyrin repeats (3 copies) | 618 | 693 | IPR002110 | GO:0005515 | |
| Vvi14g683 | 794 | Pfam | Ankyrin repeats (3 copies) | 518 | 604 | IPR002110 | GO:0005515 | |
| Vvi14g683 | 794 | Pfam | KHA, dimerisation domain of potassium ion channel | 718 | 787 | IPR021789 | - | |
| Vvi14g683 | 794 | SUPERFAMILY | cAMP-binding domain-like | 294 | 483 | IPR018490 | - | |
| Vvi14g683 | 794 | Pfam | Cyclic nucleotide-binding domain | 386 | 470 | IPR000595 | - | |
| Vvi14g683 | 794 | SUPERFAMILY | Ankyrin repeat | 518 | 696 | IPR036770 | - | |
| Vvi14g683 | 794 | Gene3D | - | 48 | 292 | - | - | |
| Vvi14g683 | 794 | CDD | CAP_ED | 366 | 480 | IPR000595 | - | |
| Vvi14g683 | 794 | ProSiteProfiles | Ankyrin repeat profile. | 640 | 672 | IPR002110 | GO:0005515 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi14g683 | K21867 | - | vvi:100233111 | 1559.66 |