Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g7 ATGTCTTCTTCTAGACCTACTCAGTCATCCAGCACTTCAGGTCGATCAAAACACAGTGCTAGGATTATTGCTCAGACCACCGTGGATGCAAAGCTACATGCGGATTTTGAGGAGTCAGGTAGTTCATTTGACTACTCAAGTTCAGTGCGTTTTACTCCAGCTGGTGGAGATCAACAGCCCAGATCTGACAAAGTAACAACAGCTTACCTCCATCACATACAGAAAGGCAAACTGATCCAACCATTTGGCTCTTTGTTAGCCCTAGATGAGAAAACTTTCAAAGTCATTGCCTACAGTGAAAATGCCCCTGAAATGTTGACAATGGTTAGTCATGCAGTCCCAAGCGTTGGTGAGCATCCAGTTCTGGGCATTGGTACTGATGTGAGGACCATCTTCAGTGGCCCCAGTGCATCTGCACTGCACAAGGCCTTAGGATTTGGAGAGGTTTCTCTTCTGAATCCCATCTTAGTCCATTGCAAAACCTCAGGGAAGCCCTTTTATGCAATCATCCATAGGGTCACTGGTAGCTTGATCATTGACTTTGAACCGGTGAAGCCTTACGAAGTTCCCATGACTGCTGCTGGTGCCCTGCAATCCTATAAGCTTGCAGCCAAAGCAATCACGAGGTTGCAGTCGCTGCCTAGTGGTAGCTTGGAAAGGCTTTGTGATACAATGGTTCAAGAGGTTTTTGAACTCACTGGTTATGACAGGGTGATGGCTTATAAATTTCATGATGACGACCATGGGGAGGTTGTCTCTGAGATAACAAAGCCAGGCCTTGAGCCATATCTGGGTTTACATTATCCTGCCACAGATATCCCTCAGGCTGCACGTTTCTTATTCATGAAGAATAAGGTCCGAATGATCTGTGATTGTCGTGCAAAACACATACAGGTTCTTCAAGATGAGAAACTCCCATTTGATTTAACATTATGTGGTTCAACACTACGGGCTCCACACAGTTGCCATGTACAGTATATGGAGAACATGAATTCAATTGCTTCTCTTGTTATGGCAGTTGTTGTCAATGACGGGGATGAAGAGGGTGAAAGCTCTAATTCTGGGCAGCCACAGAAGAGAAAGAGGCTTTGGGGTTTAGTGGTTTGCCATCATACAACTCCAAGGTTTGTTCCCTTCCCTCTTCGCTATGCCTGCGAGTTTCTAGCTCAAGTGTTTGCCATCCATGTCAATAAGGAGTTAGAATTAGAAAGTCAGATTCTTGAGAAGAATATTCTGCGTACACAGACACTCTTGTGTGATATGCTGATGCGAGATGCGCCCTTAGGCATAGTGTCACAGAGCCCAAATGTAATGGATCTTGTGAAATGTGATGGAGCTGCTCTACTATACAAAAATAAAGTATGGAGATTGGGAATAACTCCAAGTGACTTCCAGTTGCATGATATCTGTTCATGGCTATCCGAGTACCACATGGATTCAACTGGTTTAAGCACAGATAGCTTGTATGATGCAGGATACCCAGGGGCTCTTGCCCTTGGTGATGCAGTTTGTGGGATGGCAGCTGTGAAGATAACTTCAAAGGATACTCTTTTCTGGTTCCGGTCCCACACAGCTGCAGAAGTCCGATGGGGTGGGGCAAAGCATGAACCGGGTGAGAAGGATGATGGTAGGAAGATGCACCCAAGATCATCATTTAAAGCTTTCCTTGAAGTCGTTAAGACGAGGAGTTTACCTTGGAAGGACTATGAAATGGATGCAATCCATTCTTTGCAGCTTATCCTTAGGAATGCTTTCAAAGATTCTGAGGCCATGGATGTAAACACCAATGCGATCCACACAAAGCTCAATGACCTAAAAATTGAAGGAATGCAAGAGCTAGAAGCAGTGACCAGTGAGATGGTCCGTTTGATTGAAACAGCCAGTGTGCCAATCTTGGCAGTTGATGTTGATGGTCTGGTTAATGGATGGAATACAAAAATTTCTGAGTTGACTAGTCTGCCTGTAGATAAAGCAATTGGGATGCATTTGCTCACGCTTGTGGAAGATTCTTCAGCTGATACTGTAAAAAAGATGTTGCATTTGGCGTTGCAGGGCCAAGAGGAGCAAAATGTCCAATTTGAGATCAAAACGCATGGGTCTAAAAGAGACTCTGGCCCCATCAGCTTAGTTGTAAATGCTTGTGCAAGCAGGGATCTCCATGAAAATGTTGTGGGGGTATGTTTTGTGGCCCAAGATATAACCAGTCAGAAGACGGTGATGGATAAGTTCACCCGAATTGAAGGTGATTACAAAGCAATAGTACAGAACCCAAACCCATTGATTCCCCCAATATTTGGCACAGATGAATTTGGCTGGTGCTCTGAGTGGAATCCGGCAATGGTAAAGTTATCTGGGTGGAATCGGGAAGAAGTTATGGATAAAATGCTTTTAGGGGAAGTGTTTGGGACCCATATGGCATGCTGTCGTCTCAAGAATCGAGAGGCTTTTGTTGGTTTGGGAATTGTGCTCAATAGTGTTATGACTGGTCGGGAATCAGAAAAGGTTTCCTTTGGTTTCTTTTCAAAGAGTGGGAAGTATGTAGAATGCCTGCTTTCTGTGAGCAAGAAATTGGACAGAGAGGGTGCAGTCACTGGGGTATTTTGCTTCTTGCAGTTAGCTAGCCAAGAGCTGCAACAAGCACTTCATATCCAGCGGTTGTCGGAGCAAACTGCCTTGAAGAGATTGAAAGCATTAGCTTATATAAAAAGGCAGATCAAGAATCCTCTTTCTGGGATTATCTTTTCTCGGAAGATGATGGAGGATACTGATTTGGGAGAGGAACAGCAACAGATTCTTCATACTAGTGCCCAGTGCCAGCGTCAACTCAGCAAGATTCTTGATGACCATGATCTTGATAGTATTATTGAAGGTTACTTGGATCTGGAAATGGTCGAGTTTACTCTGCGTGAAGTATTGGTTGCCTCCATCAGCCAGGTCATGATAAAGAGTAATGGAAAGGGTATTCAAATAGTTAATGATGCGGAAGAGGGGATCATGACTGAAACACTCTATGGAGATGGTCTTAGGCTTCAACAGGTGCTAGCTGATTTCTTGTTGATATCAGTAAATTTTACACCAGGTGGAGGCCAGCTTTCTGTTGCAGCTAGTTTGATCAAAGATCGGTTGGGGGAATCTGTCCATCTTGTGCATCTGGAACTCAGGATAACACATGCAGGAAATGGGGTACCAGAACAATTGCTGAACCAGATGTTTGGAAACAATGGAGACGCGTCTGAGGAGGGCATAAGTCTGCTTATCAGCAGGAAACTGGTGAAGCTGATGAATGGGGATGTCCAGTATCTAAGGGAAGCGGGAAAATCGACTTTCATCATATCAATCGAACTAGCTGCTGCTAGAAAGAAGCCACAGGCCTAA 3375 44.47 MSSSRPTQSSSTSGRSKHSARIIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGGDQQPRSDKVTTAYLHHIQKGKLIQPFGSLLALDEKTFKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIFSGPSASALHKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLCGSTLRAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNVMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAMDVNTNAIHTKLNDLKIEGMQELEAVTSEMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIGMHLLTLVEDSSADTVKKMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLHENVVGVCFVAQDITSQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVKLSGWNREEVMDKMLLGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSKSGKYVECLLSVSKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIKRQIKNPLSGIIFSRKMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLEMVEFTLREVLVASISQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISVNFTPGGGQLSVAASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEEGISLLISRKLVKLMNGDVQYLREAGKSTFIISIELAAARKKPQA* 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 115070 121673 + Vvi14g7 Vvi14g7 775074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g7 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 869 IPR035965 -
Vvi14g7 1124 ProSiteProfiles Histidine kinase domain profile. 900 1117 IPR005467 -
Vvi14g7 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 729 IPR035965 -
Vvi14g7 1124 PIRSF Phytochrome_conventional 1 1124 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vvi14g7 1124 Pfam PAS fold 68 184 IPR013654 GO:0006355
Vvi14g7 1124 Gene3D - 874 960 - -
Vvi14g7 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 217 390 IPR016132 -
Vvi14g7 1124 MobiDBLite consensus disorder prediction 1 23 - -
Vvi14g7 1124 Pfam Phytochrome region 413 588 IPR013515 GO:0006355|GO:0009584
Vvi14g7 1124 TIGRFAM sensory_box: PAS domain S-box protein 623 739 IPR000014 -
Vvi14g7 1124 SMART gaf_1 217 410 IPR003018 GO:0005515
Vvi14g7 1124 CDD HATPase_Phy-like 1004 1115 IPR044767 -
Vvi14g7 1124 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Vvi14g7 1124 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Vvi14g7 1124 Gene3D - 405 578 IPR043150 -
Vvi14g7 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1005 1115 IPR003594 -
Vvi14g7 1124 SUPERFAMILY GAF domain-like 197 397 - -
Vvi14g7 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 317 326 IPR013516 -
Vvi14g7 1124 SMART HisKA_10 893 957 IPR003661 GO:0000155|GO:0007165
Vvi14g7 1124 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1119 - -
Vvi14g7 1124 Gene3D - 961 1120 IPR036890 -
Vvi14g7 1124 ProSiteProfiles PAC domain profile. 689 745 IPR000700 -
Vvi14g7 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1113 IPR036890 -
Vvi14g7 1124 Pfam His Kinase A (phospho-acceptor) domain 897 952 IPR003661 GO:0000155|GO:0007165
Vvi14g7 1124 Gene3D - 198 561 IPR029016 -
Vvi14g7 1124 PANTHER PHYTOCHROME A 1 1119 - -
Vvi14g7 1124 Pfam PAS fold 749 871 IPR013767 GO:0006355
Vvi14g7 1124 Pfam PAS fold 619 733 IPR013767 GO:0006355
Vvi14g7 1124 MobiDBLite consensus disorder prediction 1 24 - -
Vvi14g7 1124 Pfam GAF domain 217 400 IPR003018 GO:0005515
Vvi14g7 1124 SMART pas_2 618 684 IPR000014 -
Vvi14g7 1124 SMART pas_2 748 817 IPR000014 -
Vvi14g7 1124 Coils Coil 397 417 - -
Vvi14g7 1124 CDD PAS 627 733 IPR000014 -
Vvi14g7 1124 CDD PAS 760 871 IPR000014 -
Vvi14g7 1124 Gene3D PAS domain 610 747 - -
Vvi14g7 1124 CDD HisKA 898 948 IPR003661 GO:0000155|GO:0007165
Vvi14g7 1124 Gene3D PAS domain 73 320 - -
Vvi14g7 1124 PRINTS Phytochrome signature 132 154 IPR001294 GO:0006355|GO:0009584
Vvi14g7 1124 PRINTS Phytochrome signature 232 251 IPR001294 GO:0006355|GO:0009584
Vvi14g7 1124 PRINTS Phytochrome signature 317 338 IPR001294 GO:0006355|GO:0009584
Vvi14g7 1124 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Vvi14g7 1124 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Vvi14g7 1124 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Vvi14g7 1124 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355|GO:0009584
Vvi14g7 1124 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355|GO:0009584
Vvi14g7 1124 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355|GO:0009584
Vvi14g7 1124 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355|GO:0009584
Vvi14g7 1124 SMART HKATPase_4 1005 1117 IPR003594 -
Vvi14g7 1124 Gene3D PAS domain 762 873 - -
Vvi14g7 1124 SUPERFAMILY GAF domain-like 408 585 - -
Vvi14g7 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 73 185 IPR035965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g7 K12120 PHYA; phytochrome A - vvi:100240824 2194.08
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g7 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda08g01174 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g00671 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g1138 . 5 1168 Histidine Kinase Gene Family AT2G17820 67.1 0.0e+00 1484.2
Vvi1g534 . 1 839 Histidine Kinase Gene Family AT2G01830 70.4 0.0e+00 1194.1
Vvi1g1264 . 87 1035 Histidine Kinase Gene Family AT2G01830 54.9 4.3e-282 968.0
Vvi12g685 . 287 1201 Histidine Kinase Gene Family AT2G01830 53.8 3.3e-274 941.8
Vvi4g656 . 1 802 Histidine Kinase Gene Family AT5G10720 56.3 1.4e-273 939.5
Vvi14g7 . 1 1120 Histidine Kinase Gene Family AT1G09570 81.7 0.0e+00 1856.3
Vvi10g343 . 1 862 Histidine Kinase Gene Family AT1G09570 52.1 4.3e-256 881.7
Vvi5g63 . 13 922 Histidine Kinase Gene Family AT2G18790 67.2 0.0e+00 1356.3
Vvi14g7 . 7 1054 Histidine Kinase Gene Family AT2G18790 52.5 0.0e+00 1100.1
Vvi10g343 . 1 810 Histidine Kinase Gene Family AT2G18790 63.2 1.1e-304 1043.1
Vvi14g7 . 9 1114 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1149.0
Vvi12g703 . 10 913 Histidine Kinase Gene Family AT5G35840 53.7 0.0e+00 1117.4
Vvi5g63 . 6 974 Histidine Kinase Gene Family AT4G16250 64.3 0.0e+00 1377.1
Vvi14g7 . 14 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1148.7
Vvi10g343 . 1 862 Histidine Kinase Gene Family AT4G16250 61.3 0.0e+00 1079.7
Vvi10g343 . 1 863 Histidine Kinase Gene Family AT4G18130 66.6 0.0e+00 1158.3
Vvi5g63 . 46 979 Histidine Kinase Gene Family AT4G18130 52.2 4.3e-301 1031.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56