Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g772 ATGTCAAGAAAGCCAGATGAAATGACAGAAGAGATCTCAAAGGTTGAAGAAGGTCTGGGCAATGCCTATAAGCCCAAAGCCATCGACGAGGTCTACTTGTGTACTTCACCTGCGGTTGTAACCATCACACAAAAGGTGATAGCAGAAGTGATAGGGACGTATTTTGTGGTATTTGCGGGATGTGGATCAGTGGCAGTGAATGGGATATATGGGTCAGTGACATTCCCAGGAGTAGCAGCCACGTGGGGTTTGATAGTGTTGGTGATGATCTACGCTCTCGGTCATATTTCTGGTGCTCATTTCAATCCCGCCGTCACCATTACTTTTGCCATTCTCCGACGTTTCCCATACTGGCAGGTTCCATTGTACATTATAGGTCAATTAATGGGATCAATTCTAGCAAGTGGGACATTATCATTCATGTTCAATATAGATCGTGAAGCTTATTTTGGAACTGTTCCTGCCGGATCTCATGGCCAGTCTTTAGTCCTTGAAATCATCATCACCTTCCTACTCATGTTCGTCATCTCCGGCGTTGCCACCGATAGTAGAGCGACAGGAGAATTGGCTGGGATCGCAGTTGGAATGACTATAATGTTGAATGTCTTTGTTGCTGGGCCTGTATCAGGAGCATCAATGAACCCAGCAAGAAGCATTGGACCAGCTTTGGTGAAGCATGTTTATAAAGGACTGTGGGTGTATGTAATTGGCCCAATTATTGGAGCCATTGCAGGGGGGCTTACATATAATTTAATCAGATTTACTGAGAAGCCTCTTAGTGAGTTAACCAAGACTAGCTCCTTGCTCAGGACCATCTCCAAGAGTGTCCCTAGGAAACAGTTGCTTGTAGAGATGATAGGAACATATATTCTAATATTCATGGGATGTGGATCAATGGTAGTGAATAAGATATATGGGCAAGTGACATTACTAGGAATAGCAATGACATGGGGCTTAACAATAATGGTGATAGTCTACTCTATTGGTCATGTTTCTGGTGCTCACTTCAATCCCTCCATCACCATTGCTTTTTTCATGGTCGGCCATTTGCCTTACCCTCAAGTTCCGTTATACATAACAGCTCAATTAATAGGATCACTTTTGGCAATCTGCGCCGTTGCCACATATAGTAGAGCGAGTGGAGGCTTTGCTGGTCTCGCCATTGGAATGACTATATTGCTCGTATCAGGAGCATCATTGAACCCAGCAAGAAGCATCGGACCAGCTATGGTGAAGCATATCTATACACAGGACTTTGGATCTATATATTTGGCCCAATTATTGGAGCCATTGCAGGAATCTATATACAGAACCCAAGAGGAGATGCATGAATTACTTCTGAGTTTTGCTGAAGCTAGAGCTACAGTTGTGAGACTTAAAGGAGAGGATAGGGCACTTTGA 1401 43.83 MSRKPDEMTEEISKVEEGLGNAYKPKAIDEVYLCTSPAVVTITQKVIAEVIGTYFVVFAGCGSVAVNGIYGSVTFPGVAATWGLIVLVMIYALGHISGAHFNPAVTITFAILRRFPYWQVPLYIIGQLMGSILASGTLSFMFNIDREAYFGTVPAGSHGQSLVLEIIITFLLMFVISGVATDSRATGELAGIAVGMTIMLNVFVAGPVSGASMNPARSIGPALVKHVYKGLWVYVIGPIIGAIAGGLTYNLIRFTEKPLSELTKTSSLLRTISKSVPRKQLLVEMIGTYILIFMGCGSMVVNKIYGQVTLLGIAMTWGLTIMVIVYSIGHVSGAHFNPSITIAFFMVGHLPYPQVPLYITAQLIGSLLAICAVATYSRASGGFAGLAIGMTILLVSGASLNPARSIGPAMVKHIYTQDFGSIYLAQLLEPLQESIYRTQEEMHELLLSFAEARATVVRLKGEDRAL* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 17711146 17762011 + Vvi14g772 Vvi14g772 775839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g772 466 Pfam Major intrinsic protein 278 374 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi14g772 466 Pfam Major intrinsic protein 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi14g772 466 Gene3D Glycerol uptake facilitator protein. 39 259 IPR023271 -
Vvi14g772 466 PANTHER AQUAPORIN NIP4-1-RELATED 369 417 - -
Vvi14g772 466 PANTHER AQUAPORIN NIP4-1-RELATED 28 265 - -
Vvi14g772 466 PANTHER AQUAPORIN NIP4-1-RELATED 276 372 - -
Vvi14g772 466 SUPERFAMILY Aquaporin-like 41 262 IPR023271 -
Vvi14g772 466 Gene3D Glycerol uptake facilitator protein. 370 428 IPR023271 -
Vvi14g772 466 Gene3D Glycerol uptake facilitator protein. 260 369 IPR023271 -
Vvi14g772 466 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi14g772 466 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi14g772 466 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi14g772 466 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi14g772 466 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi14g772 466 PRINTS Major intrinsic protein family signature 232 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi14g772 466 CDD MIP 44 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi14g772 466 TIGRFAM MIP: MIP family channel proteins 48 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi14g772 466 ProSitePatterns MIP family signature. 335 343 IPR022357 -
Vvi14g772 466 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Vvi14g772 466 PANTHER AQUAPORIN NIP2-1 369 417 IPR034294 -
Vvi14g772 466 PANTHER AQUAPORIN NIP2-1 276 372 IPR034294 -
Vvi14g772 466 PANTHER AQUAPORIN NIP2-1 28 265 IPR034294 -
Vvi14g772 466 SUPERFAMILY Aquaporin-like 279 415 IPR023271 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g772 K09874 - vvi:100256997 531.946