Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g875 ATGGCCCACTTCCCCATTGGATACATATCCTCAATTCAGACCCCGCCAAGGGGCAATACAGCCTTTTTATTGGAACCATACCCTCAATTATTTGAACATCCCTTGAGTTCTCTCAGGAGGCTCTATAATTGGAATTGTGTAATAGTTGATTTTTCTGACAGTATGCAGAGCTTTAGGCCTTCTCAACCTTTCTTGGGCATGGATGTGACCATGGAAATGGTGAACCAGTTTGCAGAGATGAATCCAATTATGTTGGAGAATTTCAACATAACTGATGTTTCAGTGGAGAATCTTTTGGCCCACCAGCAGCCTGAGCTCATGGGAACGTTTGCTTATAATCTTCAATCTAGTTTTGAGTCCAATGGACTGAGCTCAATGCCAGTGGTTCAGAGCATGCCCTCGAGTGGAAATGCTTTCCATGAAAGCAAGAGGAGAAAGGTGATGGAACAATCAAAAAGCAGCTCAGAGAACATTTCTTCTATGGCTTCTGGAAGTGGTTTGAAAGAAATTAGTAGTACTAAGAAAAAGAATAACTTGGGTAAAGGAAAGAAAGGGAGGAACAGTGATAAAGAATTATTGGACAAACCAGATGAAGTGATTCATGTCCGAGCAAGAAGAGGACAAGCTACTGACAACCACAGTATAGCAGAAAGGGTGAGAAGGGAGAAAATCAAGACTCGGCTGCGATGCTTGCAGGACCTTGTTCCTGGATGCTACAAGAATAAGGGAATGGCAGTAATGTTGGATGAGATAATCAATTATGTGCACTCACTGCAGAATCAGGTCGAGTTTCTTTCTAGGGAGCTTGCAGCAGCTAGTTCACTTCACAACTTCAACTCTGAAACAGAAGCTATAAAAAATGCTCAGGGAACAAATACACATGAGGGGCAGGAGATGGAGAAAATAGTGAGGAAAGGATATGGAGAACACTCTTGCTTCTACCCGACAAGGACCATTTGA 960 42.6 MAHFPIGYISSIQTPPRGNTAFLLEPYPQLFEHPLSSLRRLYNWNCVIVDFSDSMQSFRPSQPFLGMDVTMEMVNQFAEMNPIMLENFNITDVSVENLLAHQQPELMGTFAYNLQSSFESNGLSSMPVVQSMPSSGNAFHESKRRKVMEQSKSSSENISSMASGSGLKEISSTKKKNNLGKGKKGRNSDKELLDKPDEVIHVRARRGQATDNHSIAERVRREKIKTRLRCLQDLVPGCYKNKGMAVMLDEIINYVHSLQNQVEFLSRELAAASSLHNFNSETEAIKNAQGTNTHEGQEMEKIVRKGYGEHSCFYPTRTI* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 21028394 21030424 + Vvi14g875 Vvi14g875 775942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g875 319 MobiDBLite consensus disorder prediction 125 198 - -
Vvi14g875 319 MobiDBLite consensus disorder prediction 152 173 - -
Vvi14g875 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 258 IPR011598 GO:0046983
Vvi14g875 319 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 67 316 IPR024097 GO:0006355
Vvi14g875 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 275 IPR036638 GO:0046983
Vvi14g875 319 MobiDBLite consensus disorder prediction 182 198 - -
Vvi14g875 319 Coils Coil 248 275 - -
Vvi14g875 319 Gene3D - 205 286 IPR036638 GO:0046983
Vvi14g875 319 SMART finulus 214 264 IPR011598 GO:0046983
Vvi14g875 319 PANTHER TRANSCRIPTION FACTOR BEE 3-LIKE ISOFORM X1 67 316 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g875 Vvi17g314 ECH
Vvi1g326 Vvi14g875 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14029 PF00010 HLH 0.00019 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g875 - - vvi:104881566 572.392