Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g918 ATGCCAATGTATATGGCAATGTTTGAGGCTATCCAAGAATCCTTACCAGTCTGCCCATCAACAACGGAATCAGCTCTAGTGACCAAGATGTCTGACTATTCATGGCGAGTAGGTGGGACTAGTGGGATATCAGACTCCGAAAATGGCGTGGGGGCTGTGTACTTGCGAAAGTTAACTTCTTCTAAATATAAAGGAGTGGTTCCCCAGCCTAATGGCCGGTGGGGAGCACAAATATACGAGAAGCACCGGCGCATTTGGCTGGGAACTTTCAATGAAGAAGGAGAAGCTGCCAAGGCCTATGATGGTATCCAAGACGACATTGAAACAACGTTCTTGAACTCGCATTCTAAGGCTGAGATAGTGGACATGCTCCGAAAACACACCTACAATGATGAGCTTGAGCAAAGTGCGCACAATTATGGAAGCAAAGAAAGTGGTGCGGATGTCATGGACTCTTCCAAGGGTGGTTTATTGAATTTTGAGGACAACGGCGGGAAGATTTGGAGGTTTAGGTACTCCTTTTGGAATAGTAGCCAGAGCTATGTGCTAACAAAAGGTTGGAGGCGCTTTGTAAAGGAGAAGAACTTGAAAGCTGGGGATATCGTTAGCTTTCATCGGTCAACTGGGTCGGATAAACGGCTATTCATAGAGTGGGAGCAGCGAGACAGTTCCAGAAAGCCATCAATGAAGCAGGTCGAGAGTGGTCAGATGGTTAGATTATTTGGAGTGAACTTGTTTAGTAAGTCCTAG 750 46.13 MPMYMAMFEAIQESLPVCPSTTESALVTKMSDYSWRVGGTSGISDSENGVGAVYLRKLTSSKYKGVVPQPNGRWGAQIYEKHRRIWLGTFNEEGEAAKAYDGIQDDIETTFLNSHSKAEIVDMLRKHTYNDELEQSAHNYGSKESGADVMDSSKGGLLNFEDNGGKIWRFRYSFWNSSQSYVLTKGWRRFVKEKNLKAGDIVSFHRSTGSDKRLFIEWEQRDSSRKPSMKQVESGQMVRLFGVNLFSKS* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 22050930 22055841 - Vvi14g918 Vvi14g918 775985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g918 249 Gene3D AP2/ERF domain 61 104 IPR036955 GO:0003700|GO:0006355
Vvi14g918 249 ProSiteProfiles AP2/ERF domain profile. 62 101 IPR001471 GO:0003700|GO:0006355
Vvi14g918 249 CDD AP2 61 101 IPR001471 GO:0003700|GO:0006355
Vvi14g918 249 SMART B3_2 107 222 IPR003340 GO:0003677
Vvi14g918 249 PANTHER AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 28 142 - -
Vvi14g918 249 PANTHER AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 152 247 - -
Vvi14g918 249 CDD B3_DNA 142 207 IPR003340 GO:0003677
Vvi14g918 249 Pfam AP2 domain 61 101 IPR001471 GO:0003700|GO:0006355
Vvi14g918 249 SUPERFAMILY DNA-binding domain 61 102 IPR016177 GO:0003677
Vvi14g918 249 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 142 IPR044800 GO:0003700
Vvi14g918 249 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 152 247 IPR044800 GO:0003700
Vvi14g918 249 Pfam B3 DNA binding domain 153 219 IPR003340 GO:0003677
Vvi14g918 249 Gene3D - 114 231 IPR015300 -
Vvi14g918 249 SUPERFAMILY DNA-binding pseudobarrel domain 151 217 IPR015300 -
Vvi14g918 249 ProSiteProfiles B3 DNA-binding domain profile. 158 222 IPR003340 GO:0003677
Vvi14g918 249 SMART rav1_2 62 116 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g266 Vvi14g918 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14034 PF02362 B3 8.60E-19 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g918 K09287 - vvi:100251473 419.083