Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi14g918 | ATGCCAATGTATATGGCAATGTTTGAGGCTATCCAAGAATCCTTACCAGTCTGCCCATCAACAACGGAATCAGCTCTAGTGACCAAGATGTCTGACTATTCATGGCGAGTAGGTGGGACTAGTGGGATATCAGACTCCGAAAATGGCGTGGGGGCTGTGTACTTGCGAAAGTTAACTTCTTCTAAATATAAAGGAGTGGTTCCCCAGCCTAATGGCCGGTGGGGAGCACAAATATACGAGAAGCACCGGCGCATTTGGCTGGGAACTTTCAATGAAGAAGGAGAAGCTGCCAAGGCCTATGATGGTATCCAAGACGACATTGAAACAACGTTCTTGAACTCGCATTCTAAGGCTGAGATAGTGGACATGCTCCGAAAACACACCTACAATGATGAGCTTGAGCAAAGTGCGCACAATTATGGAAGCAAAGAAAGTGGTGCGGATGTCATGGACTCTTCCAAGGGTGGTTTATTGAATTTTGAGGACAACGGCGGGAAGATTTGGAGGTTTAGGTACTCCTTTTGGAATAGTAGCCAGAGCTATGTGCTAACAAAAGGTTGGAGGCGCTTTGTAAAGGAGAAGAACTTGAAAGCTGGGGATATCGTTAGCTTTCATCGGTCAACTGGGTCGGATAAACGGCTATTCATAGAGTGGGAGCAGCGAGACAGTTCCAGAAAGCCATCAATGAAGCAGGTCGAGAGTGGTCAGATGGTTAGATTATTTGGAGTGAACTTGTTTAGTAAGTCCTAG | 750 | 46.13 | MPMYMAMFEAIQESLPVCPSTTESALVTKMSDYSWRVGGTSGISDSENGVGAVYLRKLTSSKYKGVVPQPNGRWGAQIYEKHRRIWLGTFNEEGEAAKAYDGIQDDIETTFLNSHSKAEIVDMLRKHTYNDELEQSAHNYGSKESGADVMDSSKGGLLNFEDNGGKIWRFRYSFWNSSQSYVLTKGWRRFVKEKNLKAGDIVSFHRSTGSDKRLFIEWEQRDSSRKPSMKQVESGQMVRLFGVNLFSKS* | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 22050930 | 22055841 | - | Vvi14g918 | Vvi14g918 | 775985 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi14g918 | 249 | Gene3D | AP2/ERF domain | 61 | 104 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi14g918 | 249 | ProSiteProfiles | AP2/ERF domain profile. | 62 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi14g918 | 249 | CDD | AP2 | 61 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi14g918 | 249 | SMART | B3_2 | 107 | 222 | IPR003340 | GO:0003677 | |
Vvi14g918 | 249 | PANTHER | AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 | 28 | 142 | - | - | |
Vvi14g918 | 249 | PANTHER | AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 | 152 | 247 | - | - | |
Vvi14g918 | 249 | CDD | B3_DNA | 142 | 207 | IPR003340 | GO:0003677 | |
Vvi14g918 | 249 | Pfam | AP2 domain | 61 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi14g918 | 249 | SUPERFAMILY | DNA-binding domain | 61 | 102 | IPR016177 | GO:0003677 | |
Vvi14g918 | 249 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 28 | 142 | IPR044800 | GO:0003700 | |
Vvi14g918 | 249 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 152 | 247 | IPR044800 | GO:0003700 | |
Vvi14g918 | 249 | Pfam | B3 DNA binding domain | 153 | 219 | IPR003340 | GO:0003677 | |
Vvi14g918 | 249 | Gene3D | - | 114 | 231 | IPR015300 | - | |
Vvi14g918 | 249 | SUPERFAMILY | DNA-binding pseudobarrel domain | 151 | 217 | IPR015300 | - | |
Vvi14g918 | 249 | ProSiteProfiles | B3 DNA-binding domain profile. | 158 | 222 | IPR003340 | GO:0003677 | |
Vvi14g918 | 249 | SMART | rav1_2 | 62 | 116 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14034 | PF02362 | B3 | 8.60E-19 | CL0405 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi14g918 | K09287 | - | vvi:100251473 | 419.083 |