Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g957 ATGAGAAGCAGGGTAATTGCTTTCTGGTTTGTGCCTTTTTTATGGTTCTGGACTTCTGCAAATGGTTTGCTTTCTCCCAAAGGTGTAAACTTTGAAGTGCAAGCTTTAATGGGTATAAAAGCTTTTCTAGTGGATCCTCATGGTGTTCTTGACAATTGGGATGGGGATGCTGTTGATCCATGTAGCTGGACAATGGTCACTTGCTCTACTGACTCTCTAGTGGTTGGCCTGGGGACTCCTAGCCAGAATTTATCAGGCACTCTTTCTCCAAGCATAGGCAACTTAACAAATCTGCAGATTGTGCTCTTACAGAACAATAACATCACAGGACCAATCCCACAAGAGCTTGGAAGGCTCTCAAAGCTTCATACACTTGATCTTTCTAATAATTTCTTCACTGATGAAGTTCCCTCTTCTCTGGGTCACTTGACAAGCCTCCAATACTTGAGGCTCAACAATAACAGTCTATCAGGACCATTCCCAGTGTCATTGGCTAACATGACCCAGCTTGCTTTTCTTGACTTATCTTTCAATAATTTGAGTGGCCCTGTACCCAGATTTCCTGCTAAAACCTTCAACATTGTAGGCAACCCTCTGATCTGTGCAACAGGATCCGAACAAGAATGCTATGGAACGACATTGATGCCTATGTCCATGACCTTGAACAGCTCACAGACTGCCTTACCTACGAGAAGATCGAAGAATCACAAACTTGCCCTTGCCTTTGGGACAAGCCTTGGATGCATATGTCTGCTCATCTTTGGGGGTGGACTGCTTCTGTGGTGGAGGCAACGACATAACCAGCAGATGTTCTTTGATGTTAATGACCGGCATCATGAGGAAGTTTCCCTTGGAAACTTGAAGAGGTTCCAATTTAGAGAACTTCAGATTGCAACAGACAATTTCAGCAGCAAGAACATACTAGGAAAAGGTGGCTTTGGAAATGTCTACAAAGGGTATCTCCAGGATGGGACTATTGTAGCTGTAAAGAGGCTTAAAGATGGCAATGCCGTTGGAGGAGAAATACAATTCCAGACTGAAGTCGAGATGATCAGCCTAGCAGTTCATCGGAACCTCCTCAGGCTATATGGTTTTTGTATCACCACCTCTGAAAGGCTTCTGGTTTACCCCTACATGTCCAATGGCAGTGTTGCTTCTCGTCTCAAAGGGAAGCCAGTCTTGGACTGGGGCACCAGGAAGAGAATTGCCTTAGGAGCTGCAAGAGGATTGCTATACCTCCACGAGCAGTGTGACCCGAAGATCATTCATAGGGATGTGAAGGCTGCAAACATATTGCTCGATGACTATTGTGAGGCTGTGGTAGGAGATTTTGGGTTGGCAAAACTTTTGGATCACCAAGACTCTCATGTGACAACAGCCGTTAGGGGCACTGTGGGGCACATAGCTCCTGAGTACCTTTCCACAGGCCAGTCCTCTGAAAAAACCGATGTATTCGGGTTTGGGATCCTTCTCCTTGAATTAATCACAGGACAGAGAGCTCTAGAATTTGGCAAGGCAGCTAACCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAGGAGAAGAGGCTTGAGATTCTAGTAGACAAGGATCTAAAGCACTTCTACGATCGGGTCGAACTCGAGGAAATGGTGCAGGTTGCTCTCTTGTGCACCCAATACCTTCCAGGGCACAGGCCTAAAATGTCTGAAGTGGTGCAAATGCTTGAAGGTGATGGGCTTGCAGAGAGATGGGAAGCTTCTCAGAGAGGTGAAGTAACCAAGTGCAAACCCCACGAACTATCCTCATCAGAACGCTACTCTGACCTTACTGATGACTCTTCATTACTTGTCCAAGCAATGGAGCTTTCTGGCCCACGGTGA 1869 45.85 MRSRVIAFWFVPFLWFWTSANGLLSPKGVNFEVQALMGIKAFLVDPHGVLDNWDGDAVDPCSWTMVTCSTDSLVVGLGTPSQNLSGTLSPSIGNLTNLQIVLLQNNNITGPIPQELGRLSKLHTLDLSNNFFTDEVPSSLGHLTSLQYLRLNNNSLSGPFPVSLANMTQLAFLDLSFNNLSGPVPRFPAKTFNIVGNPLICATGSEQECYGTTLMPMSMTLNSSQTALPTRRSKNHKLALAFGTSLGCICLLIFGGGLLLWWRQRHNQQMFFDVNDRHHEEVSLGNLKRFQFRELQIATDNFSSKNILGKGGFGNVYKGYLQDGTIVAVKRLKDGNAVGGEIQFQTEVEMISLAVHRNLLRLYGFCITTSERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKRLEILVDKDLKHFYDRVELEEMVQVALLCTQYLPGHRPKMSEVVQMLEGDGLAERWEASQRGEVTKCKPHELSSSERYSDLTDDSSLLVQAMELSGPR* 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 22672405 22675890 + Vvi14g957 Vvi14g957 776024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g957 622 SMART serkin_6 302 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g957 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 622 - -
Vvi14g957 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Vvi14g957 622 ProSiteProfiles Protein kinase domain profile. 302 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g957 622 Pfam Protein kinase domain 303 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g957 622 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 2 622 - -
Vvi14g957 622 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Vvi14g957 622 SUPERFAMILY Protein kinase-like (PK-like) 279 572 IPR011009 -
Vvi14g957 622 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Vvi14g957 622 SUPERFAMILY L domain-like 32 194 - -
Vvi14g957 622 Gene3D Ribonuclease Inhibitor 29 211 IPR032675 -
Vvi14g957 622 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Vvi14g957 622 Gene3D Transferase(Phosphotransferase) domain 1 379 591 - -
Vvi14g957 622 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1026 Vvi14g957 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76234 PF00069 Pkinase 2.10E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g957 - - vvi:100253129 1226.85