Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g959 ATGGCTGACACGTGTCTCGCACCCCACCTGGGGGCAGAGTTTGCATTCACAAGTGTAGCCCGAAACATGGAGAGTGACGCGTGTCACTCAAAAGGATTCTCTACAACCCCCACTTGCCTCTTCCGTCTTCCTACAGTTACCTCTTCACCACCCTTCGTTCACTGTGCACCCGAAACACAAACCTACGCTCACTCTCACAGTCTCACACACATGTTGAAGGACGAAGGTTGTAACGCTGATGCCGCCGCCGGTGGAGGCGGTGGTTGGGCTCGTGTTTGCGACACGTGTAGGTCGGCGGCATGCACTATTTACTGCAGAGCGGACTCCGCCTACCTGTGCGCTGGCTGCGACGCCCGCATACACGCCGCCAACAGGGTGGCGTCGCAGCACGAGCGGGTCTGGGTGTGCGAGTCGTGCGAGCGCGCTCCGGCGGCGTTCGTCTGCAAGGCGGACGCGGCGTCGCTCTGCGCCACCTGCGACGCTGACATCCACTCCGCTAATCCTCTGGCCCGCCGACACCACCGCGTGCCGGTTCTCCCCATCGCCGGCTGCCTCTACGGGCCTCCCGCCACCGACCCCGGAGGCACCGAAGACGAAGACGAGGCAGCTTCGTGGCTGTTGCTGAACCCAGTGAAGAATAACAACGGAAGCAGCAACAACCAGAACAATGGATTGTTGTTCGGTGGGGAGGTGGATGAGTATCTGGACCTAGTGGAGTACAATTCATGCCCTGAGAATCAGTTCAGTGATCAGTATAATCAGCAGCAGCCGCCGCCGCATTACAGCGTTCCGCACAAGAATTATGGGGGAGACCGTGTCGTGCCAGTTCAGTGCGGGGAAGCAAAGGGGCAGCTACACCAGCAGCATCAGCAGCAGGGTTTTCATCTGGGGATGGAGTATGAGTCCTCGAAAGCTGCCTACAGCTACAACCCTTCAATTAGCCACAGCGTCTCTGTGTCATCAATGGATGTTGGCGTCGTGCCAGAAGCAACAACTATGAGTGATATCTCAATCTCAATCTCGCATCCGAGACCTCCCAAGGGAACAATCGACCTTTTCTCAGGCCCTCCAATTCAGATGCCAACCCAGCTGACTCCAATGGATAGGGAGGCAAGGGTCCTGAGGTACAGAGAGAAAAAGAAGACAAGGAAGTTTGAGAAGACAATCAGGTATGCATCAAGGAAAGCATATGCAGAGACAAGACCCCGGATCAAGGGCAGGTTTGCCAAGAGGACAGATGTAGAAGTTGAAGTGGATCAGATGTTCTCTACGACATTAATGGCGGAAAGCGGATATGGCATTGTCCCGTCATTCTAA 1317 55.96 MADTCLAPHLGAEFAFTSVARNMESDACHSKGFSTTPTCLFRLPTVTSSPPFVHCAPETQTYAHSHSLTHMLKDEGCNADAAAGGGGGWARVCDTCRSAACTIYCRADSAYLCAGCDARIHAANRVASQHERVWVCESCERAPAAFVCKADAASLCATCDADIHSANPLARRHHRVPVLPIAGCLYGPPATDPGGTEDEDEAASWLLLNPVKNNNGSSNNQNNGLLFGGEVDEYLDLVEYNSCPENQFSDQYNQQQPPPHYSVPHKNYGGDRVVPVQCGEAKGQLHQQHQQQGFHLGMEYESSKAAYSYNPSISHSVSVSSMDVGVVPEATTMSDISISISHPRPPKGTIDLFSGPPIQMPTQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEVEVDQMFSTTLMAESGYGIVPSF* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 22695811 22698379 + Vvi14g959 Vvi14g959 776026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g959 438 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 75 438 IPR045281 GO:0009909
Vvi14g959 438 CDD Bbox1_BBX-like 135 178 - -
Vvi14g959 438 ProSiteProfiles Zinc finger B-box type profile. 88 135 IPR000315 GO:0008270
Vvi14g959 438 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 75 438 - -
Vvi14g959 438 SMART bboxneu5 136 178 IPR000315 GO:0008270
Vvi14g959 438 SMART bboxneu5 88 135 IPR000315 GO:0008270
Vvi14g959 438 ProSiteProfiles Zinc finger B-box type profile. 131 178 IPR000315 GO:0008270
Vvi14g959 438 Pfam CCT motif 369 411 IPR010402 GO:0005515
Vvi14g959 438 ProSiteProfiles CCT domain profile. 369 411 IPR010402 GO:0005515
Vvi14g959 438 CDD Bbox1_BBX-like 92 135 - -
Vvi14g959 438 Pfam B-box zinc finger 133 177 IPR000315 GO:0008270
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14037 PF00643 zf-B_box 7.60E-07 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g959 - - vvi:100248114 691.419