Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi14g984 | ATGTATATTATTGTATTGGTTGGAGAGAAAAGTGCTTTAATTCCTCTTTGTTTTCCTTCACCCCAGCCGTCGGAGCAGTTAGCCTTTGCTCGCCGGACCACTTTTCTCTGCAGGCTACCACCGCCTCTCGAAGCTCTCTCTCATCTCCAAGGGAATCGGGGTTTTGAATCAATGGTGAAGCCTACAAGGAGTCATCAGGAAGAGGAGGAAGACGACGATGAAGACATCATTGCTAGGAACGACCCCTCTTCGCTAAAAGGGGATTTGGCGATGAGGGCAGACGGGAGAAGTGTCGATCAAAAGGTGAGCGCGCACCGGTCTAAGCATTCGGCGACGGAGCAGCGCCGGAGGAGCAAGATTAATGAGAGATTTCAGATTTTAAGAGATCTCATTCCTCAAAATGACCAGAAAAGAGATAAGGCTTCATTTTTATTAGAGGTCATAGAATACATTCAGTTTTTACAAGAAAAGTTAAATATGTACGAGGGATCATACCAAGGATGGAGTCAGGAACCCACAAAGTTGATGCCATGGAGAAATCGTGGGCCTGTAGAAAATTTTATGGATCATTCTCAAGTCATAAAGAATGGCTCTGGTCATGAGAATAATGTTGCTGTCACCCCTGCAACCCTTGTGAATGCACAAAACCCAGTGGAATCCGACTTTGGCACTGCTGCTGCATATAATGTAATGGATAATACCCCTGGGCCAGCAAGTCAAGCAGTTCCCCTGAACATGCCACTGCAAACTAATATGTTCACTCATGTTGGGAGGAGTGACATACCTACACAGTCATTGCATGGATCTGTTTCTGATGTTGAGAACATTGCTTCCCAGCCCTTACCTCACTTCTCCCACGGTAGACCGTGTACAACTGACTGTGCTGTCCCAAGCAATACAGTGAATGAACCAGAGGAGCTGACAATTGAAAGTGGAACAGTTAGCATCTCAAGTGCCTACTCTCAAGGGTTGTTGAATTCACTAACCCAGGCGCTGCAATCTTCCGGCGTGGATTTGTCACAGGCTAGCATCTCAGTACAGATTGATATTGGGAAACGAGCAAATAAAGGACTGAATGCAACAACATCAAATGCAAAGGATTATGAAAACCCATCTCCTAGTAATCGAACAATGGCACATTCGGGGTTTAGGAGCAGCAGTGAGGATTCTGATCAAGCTCACAAGAGGCTCAGAACAGACACAAGCTAG | 1209 | 45.82 | MYIIVLVGEKSALIPLCFPSPQPSEQLAFARRTTFLCRLPPPLEALSHLQGNRGFESMVKPTRSHQEEEEDDDEDIIARNDPSSLKGDLAMRADGRSVDQKVSAHRSKHSATEQRRRSKINERFQILRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLNMYEGSYQGWSQEPTKLMPWRNRGPVENFMDHSQVIKNGSGHENNVAVTPATLVNAQNPVESDFGTAAAYNVMDNTPGPASQAVPLNMPLQTNMFTHVGRSDIPTQSLHGSVSDVENIASQPLPHFSHGRPCTTDCAVPSNTVNEPEELTIESGTVSISSAYSQGLLNSLTQALQSSGVDLSQASISVQIDIGKRANKGLNATTSNAKDYENPSPSNRTMAHSGFRSSSEDSDQAHKRLRTDTS* | 403 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 23125717 | 23136209 | + | Vvi14g984 | Vvi14g984 | 776051 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi14g984 | 402 | Gene3D | - | 102 | 175 | IPR036638 | GO:0046983 | |
Vvi14g984 | 402 | CDD | bHLH_AtBIM_like | 103 | 179 | - | - | |
Vvi14g984 | 402 | MobiDBLite | consensus disorder prediction | 387 | 402 | - | - | |
Vvi14g984 | 402 | MobiDBLite | consensus disorder prediction | 361 | 386 | - | - | |
Vvi14g984 | 402 | MobiDBLite | consensus disorder prediction | 59 | 117 | - | - | |
Vvi14g984 | 402 | PANTHER | BES1-INTERACTING MYC-LIKE PROTEIN | 58 | 401 | IPR044295 | GO:0003700|GO:0006351|GO:0046983 | |
Vvi14g984 | 402 | SMART | finulus | 110 | 160 | IPR011598 | GO:0046983 | |
Vvi14g984 | 402 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 104 | 177 | IPR036638 | GO:0046983 | |
Vvi14g984 | 402 | MobiDBLite | consensus disorder prediction | 361 | 402 | - | - | |
Vvi14g984 | 402 | PANTHER | TRANSCRIPTION FACTOR BIM3 | 58 | 401 | - | - | |
Vvi14g984 | 402 | MobiDBLite | consensus disorder prediction | 92 | 117 | - | - | |
Vvi14g984 | 402 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 104 | 154 | IPR011598 | GO:0046983 | |
Vvi14g984 | 402 | Pfam | Helix-loop-helix DNA-binding domain | 106 | 155 | IPR011598 | GO:0046983 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14038 | PF00010 | HLH | 2.60E-15 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi14g984 | - | - | vvi:100246438 | 681.019 |