Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g984 ATGTATATTATTGTATTGGTTGGAGAGAAAAGTGCTTTAATTCCTCTTTGTTTTCCTTCACCCCAGCCGTCGGAGCAGTTAGCCTTTGCTCGCCGGACCACTTTTCTCTGCAGGCTACCACCGCCTCTCGAAGCTCTCTCTCATCTCCAAGGGAATCGGGGTTTTGAATCAATGGTGAAGCCTACAAGGAGTCATCAGGAAGAGGAGGAAGACGACGATGAAGACATCATTGCTAGGAACGACCCCTCTTCGCTAAAAGGGGATTTGGCGATGAGGGCAGACGGGAGAAGTGTCGATCAAAAGGTGAGCGCGCACCGGTCTAAGCATTCGGCGACGGAGCAGCGCCGGAGGAGCAAGATTAATGAGAGATTTCAGATTTTAAGAGATCTCATTCCTCAAAATGACCAGAAAAGAGATAAGGCTTCATTTTTATTAGAGGTCATAGAATACATTCAGTTTTTACAAGAAAAGTTAAATATGTACGAGGGATCATACCAAGGATGGAGTCAGGAACCCACAAAGTTGATGCCATGGAGAAATCGTGGGCCTGTAGAAAATTTTATGGATCATTCTCAAGTCATAAAGAATGGCTCTGGTCATGAGAATAATGTTGCTGTCACCCCTGCAACCCTTGTGAATGCACAAAACCCAGTGGAATCCGACTTTGGCACTGCTGCTGCATATAATGTAATGGATAATACCCCTGGGCCAGCAAGTCAAGCAGTTCCCCTGAACATGCCACTGCAAACTAATATGTTCACTCATGTTGGGAGGAGTGACATACCTACACAGTCATTGCATGGATCTGTTTCTGATGTTGAGAACATTGCTTCCCAGCCCTTACCTCACTTCTCCCACGGTAGACCGTGTACAACTGACTGTGCTGTCCCAAGCAATACAGTGAATGAACCAGAGGAGCTGACAATTGAAAGTGGAACAGTTAGCATCTCAAGTGCCTACTCTCAAGGGTTGTTGAATTCACTAACCCAGGCGCTGCAATCTTCCGGCGTGGATTTGTCACAGGCTAGCATCTCAGTACAGATTGATATTGGGAAACGAGCAAATAAAGGACTGAATGCAACAACATCAAATGCAAAGGATTATGAAAACCCATCTCCTAGTAATCGAACAATGGCACATTCGGGGTTTAGGAGCAGCAGTGAGGATTCTGATCAAGCTCACAAGAGGCTCAGAACAGACACAAGCTAG 1209 45.82 MYIIVLVGEKSALIPLCFPSPQPSEQLAFARRTTFLCRLPPPLEALSHLQGNRGFESMVKPTRSHQEEEEDDDEDIIARNDPSSLKGDLAMRADGRSVDQKVSAHRSKHSATEQRRRSKINERFQILRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLNMYEGSYQGWSQEPTKLMPWRNRGPVENFMDHSQVIKNGSGHENNVAVTPATLVNAQNPVESDFGTAAAYNVMDNTPGPASQAVPLNMPLQTNMFTHVGRSDIPTQSLHGSVSDVENIASQPLPHFSHGRPCTTDCAVPSNTVNEPEELTIESGTVSISSAYSQGLLNSLTQALQSSGVDLSQASISVQIDIGKRANKGLNATTSNAKDYENPSPSNRTMAHSGFRSSSEDSDQAHKRLRTDTS* 403
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 23125717 23136209 + Vvi14g984 Vvi14g984 776051
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g984 402 Gene3D - 102 175 IPR036638 GO:0046983
Vvi14g984 402 CDD bHLH_AtBIM_like 103 179 - -
Vvi14g984 402 MobiDBLite consensus disorder prediction 387 402 - -
Vvi14g984 402 MobiDBLite consensus disorder prediction 361 386 - -
Vvi14g984 402 MobiDBLite consensus disorder prediction 59 117 - -
Vvi14g984 402 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 58 401 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vvi14g984 402 SMART finulus 110 160 IPR011598 GO:0046983
Vvi14g984 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 177 IPR036638 GO:0046983
Vvi14g984 402 MobiDBLite consensus disorder prediction 361 402 - -
Vvi14g984 402 PANTHER TRANSCRIPTION FACTOR BIM3 58 401 - -
Vvi14g984 402 MobiDBLite consensus disorder prediction 92 117 - -
Vvi14g984 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 154 IPR011598 GO:0046983
Vvi14g984 402 Pfam Helix-loop-helix DNA-binding domain 106 155 IPR011598 GO:0046983
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi1g991 Vvi14g984 ECH
Vvi14g984 Vvi17g417 ECH
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14038 PF00010 HLH 2.60E-15 No_clan Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g984 - - vvi:100246438 681.019