Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g994 ATGGGGAGAGGAAGGGTTCAGTTGAAGCGGATCGAGAACAAGATCAGTCGGCAAGTAACTTTCTCCAAGAGAAGATCTGGCCTGCTGAAGAAAGCTCATGAGATTTCTGTGCTGTGCGATGCTGAGGTAGCTTTGATCGTCTTCTCTACTAAAGGGAAGCTCTTCGAGTACTCCAGTGATTCCAGCATGGAAAGGATCCTTGAACGATATGAAAGATATTCACTTTCGGAGAGACAGCTTCTCTCAACAGATCCTGACCCACAGGGAAACTGGTCGATGGATTACCCTAAACTCACTGCTAGGATTGAAGTTTTACAAAGGAACCTGAGGCACTTTGTGGGAGAAGATCTGGATCCCTTAAGTCTGAGAGAGCTACAAAATTTGGAGCAACAGCTTGATACAGCTCTTAAGCGCATCAGAACAAGAAAGAACCAGCTTATGCATGAATCGATTTCGGAGCTTCAGAAGAAGGAGAAATCACTGGTGGAGCAAAACAACGCATTAGCAAAGAAGGTGAAGGAGAAGGAGAAGGTCGAACAGAATAATCGTGCACAATGGGAGCAGCAAAACAACATAGGCCAAAACTCATCTGCCTATGTGGTGCCACCACCCCCACTACAGCTCCCTTCACTCACCATTGGTGGTAGTTTTGTGGGGAGAGCTGTAGAGGAAGACGGAGCTGAAGCTCGACCTAGTCCCAATACCCTCATGCCACCATGGATGCTGCGCCACGTCAATGAATAA 744 47.18 MGRGRVQLKRIENKISRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDSSMERILERYERYSLSERQLLSTDPDPQGNWSMDYPKLTARIEVLQRNLRHFVGEDLDPLSLRELQNLEQQLDTALKRIRTRKNQLMHESISELQKKEKSLVEQNNALAKKVKEKEKVEQNNRAQWEQQNNIGQNSSAYVVPPPPLQLPSLTIGGSFVGRAVEEDGAEARPSPNTLMPPWMLRHVNE* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23320330 23341234 - Vvi14g994 Vvi14g994 776061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g994 247 MobiDBLite consensus disorder prediction 224 247 - -
Vvi14g994 247 Coils Coil 151 189 - -
Vvi14g994 247 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Vvi14g994 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi14g994 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi14g994 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi14g994 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi14g994 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi14g994 247 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi14g994 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8-LIKE PROTEIN 1 236 - -
Vvi14g994 247 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Vvi14g994 247 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vvi14g994 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi14g994 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi14g994 247 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi14g994 247 Coils Coil 122 145 - -
Vvi14g994 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 236 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g994 Vvi17g437 ECH
Vvi1g8 Vvi14g994 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14039 PF01486 K-box 7.80E-30 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g994 K09264 - vvi:100232953 467.233