Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g996 ATGGGGAGGGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAAATAAACAGACAGGTGACATTTGCAAAGAGAAGAAATGGACTTCTCAAGAAAGCTTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTCGCTCTCATCATCTTCTCCACCCGTGGAAAGCTCTATGAGTTCTGCAGCAGCTCAAGCATGCTCAAGACACTCGAAAGATACCAAAAATGCAGTTATGGTGCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTTGAGAGCAGCTATAGGGAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCAGCTTGAACGTCAACTTGAGACATCCTTGAAGCAAGTCAGGTCTACTAAGACCCAATTCATGCTTGATCAGCTTTCTGATCTTCAGAACAAGGAACAAGTTTTGGTTGAATCTAACAAGGCTTTGACGAGGAAGCTGGATGAAATTAGTGTCAAAAATCACCTTCAATTATCATGGGAAAGTGGTGAGCAGAGTATGCCATACGGCCACCAGCAAGCTCAGTCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAATGTCAATGGATTTATCCCTGGGTGGATGCTTTGA 732 45.36 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSRPSKELESSYREYLKLKSKFESLQRTQRNLLGEDLGPLNTKELEQLERQLETSLKQVRSTKTQFMLDQLSDLQNKEQVLVESNKALTRKLDEISVKNHLQLSWESGEQSMPYGHQQAQSQGFFQPLECNPTLQIGYNPAGSSQLSAPSNAQNVNGFIPGWML* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23363221 23379548 - Vvi14g996 Vvi14g996 776063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g996 243 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 229 - -
Vvi14g996 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi14g996 243 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vvi14g996 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Vvi14g996 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi14g996 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vvi14g996 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi14g996 243 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi14g996 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi14g996 243 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Vvi14g996 243 Coils Coil 124 144 - -
Vvi14g996 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi14g996 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi14g996 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi14g996 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g996 Vvi17g438 ECH
Vvi1g9 Vvi14g996 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14040 PF01486 K-box 2.00E-28 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g996 K09264 - vvi:100232867 474.167