Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g123 ATGGACCAGTATGAAAAAGTTGAGAAGATTGGTGAAGGAACCTATGGTGTGGTTTATAAGGCTCGTGATCGTGTGACTAATGAGACTATAGCCTTGAAGAAGATCCGCTTGGAGCAGGAAGATGAAGGAGTACCAAGCACTGCTATCAGAGAGATTTCCCTCTTGAAAGAGATGCAACATGGTAACATTGTCAGGCTACAGGATGTAGTGCACAGTGAGAAGCGGTTATATCTAGTTTTTGAGTATCTGGACTTGGATCTGAAGAAGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGGGTTCTTCATCGAGATTTGAAGCCCCAGAACTTACTCATAGATCGTCGTACCAATGCATTAAAGCTGGCAGACTTTGGATTGGCAAGAGCATTTGGTATTCCTGTTAGGACATTTACACATGAGGTGGTGACCCTGTGGTACAGAGCACCCGAAATACTGCTTGGATCACGCCACTATTCTACTCCTGTTGATGTGTGGTCTGTGGGCTGTATATTTGCTGAGATGGTGAACCAGCGACCATTGTTTCCTGGGGACTCGGAGATTGATGAATTGTTCAAGATCTTCAGGGTATTGGGCACACCAAATGAGGATACATGGCCAGGAGTGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTGAGCATGAGTACTTCAAAGATATTGGGTTTGTGCCCTGA 885 44.63 MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPDFAKDLRLIKMFLHQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPPKDLATVVPNLESAGIDLLSKMLCLDPSRRITARSALEHEYFKDIGFVP* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5019077 5024683 - Vvi15g123 Vvi15g123 776815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g123 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Vvi15g123 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Vvi15g123 294 SMART serkin_6 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g123 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vvi15g123 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Vvi15g123 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vvi15g123 294 PANTHER - 3 291 - -
Vvi15g123 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Vvi15g123 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g123 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g123 294 PANTHER CELL DIVISION PROTEIN KINASE 3 291 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76236 PF00069 Pkinase 1.20E-79 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g123 K02206 - vvi:100262312 597.045