Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g168 ATGGTTCAGAGGAAAGGATCAACTAGGGTTTCGGAAGATGCAGAAGAGCTGGTCCGCGTCCCTCTTCAGGCCATTCTGTTGGCGGACAGCTTCGCCCAGAAGTTCCGCCCCATCACCCTTGAACGCCCCAAAGTACTGCTGCCATTGGTGAATGTCCCCATGATAGACTACACTTTAGCTTGGCTTGAGTCTGCTGGGATTGAGGAGGTTTTTGTCTTTTGCTGTGCGCATTCGAAACAGGTTATTAACTATTTGGAGAATTCCCATTGGGTTTCTTTGCCGCACTTTGAGGTCACCACAATAGAGTCACACAATTCTGTCAGTGCGGGCGATGCTCTGCGTCTGATTTATGAGCGGCATGTGATACATGGAGACTTCGTCCTAATTACTGGAGATACAGTAAGCAACATGTCGCTTACACAGGCACTTCAAGAACATAAGGATAGAAGGAAGAAGGATAATAATGCTGTAATGACTATGGTTATTAAACGGTCAAAGCCTTCTCCGATTACTCATCAATCTCGACTTGGTACTGATGAGCTGTTTATGGCAATTGATCCTCACACGAAGCAGCTTCTATATTATGAGGATAAGGCAGACCATTTGAAAGGCACTTTATCTCTTGAGAAAATGTTACTAGCCGACAATCCTTCAATTTCCCTCCACAATGACAAGCAGGATTGCTATATTGACATCTGCTCGCCGGAAGTCCTCAGTATTTTCACTGACAATTTTGATTATCAACACCTGCGGCGTCATTTCATCAAGGGATTGCTTGTCGATGATATTATGGGATACAAAATTTTCACGCATGAAATTCACTCAAATTACGCGGCTAGGATTGATAACTTCAGAAGCTATGACACCATTAGTAAGGATATTATTCAAAGGTGGACATACCCATTGGTACCAGATGTTCAGTTTTTGGGAAATTGCGCAGCTAAACTTGAAAGGCAGGGAATGTACCGAGCATTGGATATCGGGCAATCACGTTCTGCACAGATTGGTCCATTTTCCATCATTGGAAATGGAACCAATATTGGTGATAACACAAAAATTTCAAATTCAGTTATCGGGGAAAGGTGTACTATTGGATCAAACGTTTCAATAGAAGGTTCCTATATATGGGATAATGTTACAATTGAAGATGGCTGCGTGCTAAAACATGCTATAGTATGCAATGATGTAATAATGAAGTCAGGAGCAGTTTTGGAACCTGGTGTTATTTTGTCTTTTAAGGTTGTTATTGGACAAGAATTTGTTGTTCCTGCGTACTCAAAGGTATCTTTACTTCAACAGCCAACAAAGCAAGATAGTGATGAGGAGCTGGAGTATGCTGACCATAACAGTGGGGTTGAAGAAATTCCATCAATCACCAGTACAGTAGATAAGTTGAATGGGGTGTTGACATGTAAATTACCTGAGACAGAGGCTTGGTCTACTTCTGAGGTTGGTTCTGGTGGGGTTGGTTATATTTGGTCAATTTGTGAAGGAGGTCATGAAGAAGAGTGGAGGCACTCTGTTGCACCAACTCCTGCTGATAAACTTACTGAGGTCATGCAAGCCACAGATGATGACCTGGAGTTAACAACTCAAGGCAGCAATGTTCTCCTACCTTCTGGAGAGTTGGTACCTGACTCTAACAGTAATATTTCTGAAGATGACGATAATGAAGATTCTAGAGATGACTCTGTCTACTTTGAGAAAGAGGTAGAAGCAACTTTCCTTAGGGCTGTTCATGAAAATGTAAAAGAAGACCATGTTATCTTAGAAGTGAATTCACTGCGGTTGTCATACAATATGACATCTGCTGACTGTGCTGGTGCATTATTCTATTCAGTAATGAAATTGGCTTTAGAAACTCCATGTAATTCAAATAGTGAATTGCTTAAAAATGTTGCTAGTGTAATTACCAGATGGCAAAAACTTATAAAGTCTTACCTACAAAGCATGGATGAGGAGATTGAAGTTATACTGAAATTTGAAGAAATGTGTTTGGAATCTGCCAAGGAATTTTCTGCATTGTTTGCACAGATTTTGCATATTTTGTATGAAAAAGACATCTTGCAAGAAGATGCTATTCTCAAATGGGCATCTGAGAAGGAGGGTGCAGAAGAATCAGATAGAGTTTTTGTTAAGCAATCAGAAAAATTCATCCAATGGCTGAATGAGGCATCCGAGGAAGAAGATTGA 2193 40.86 MVQRKGSTRVSEDAEELVRVPLQAILLADSFAQKFRPITLERPKVLLPLVNVPMIDYTLAWLESAGIEEVFVFCCAHSKQVINYLENSHWVSLPHFEVTTIESHNSVSAGDALRLIYERHVIHGDFVLITGDTVSNMSLTQALQEHKDRRKKDNNAVMTMVIKRSKPSPITHQSRLGTDELFMAIDPHTKQLLYYEDKADHLKGTLSLEKMLLADNPSISLHNDKQDCYIDICSPEVLSIFTDNFDYQHLRRHFIKGLLVDDIMGYKIFTHEIHSNYAARIDNFRSYDTISKDIIQRWTYPLVPDVQFLGNCAAKLERQGMYRALDIGQSRSAQIGPFSIIGNGTNIGDNTKISNSVIGERCTIGSNVSIEGSYIWDNVTIEDGCVLKHAIVCNDVIMKSGAVLEPGVILSFKVVIGQEFVVPAYSKVSLLQQPTKQDSDEELEYADHNSGVEEIPSITSTVDKLNGVLTCKLPETEAWSTSEVGSGGVGYIWSICEGGHEEEWRHSVAPTPADKLTEVMQATDDDLELTTQGSNVLLPSGELVPDSNSNISEDDDNEDSRDDSVYFEKEVEATFLRAVHENVKEDHVILEVNSLRLSYNMTSADCAGALFYSVMKLALETPCNSNSELLKNVASVITRWQKLIKSYLQSMDEEIEVILKFEEMCLESAKEFSALFAQILHILYEKDILQEDAILKWASEKEGAEESDRVFVKQSEKFIQWLNEASEEED* 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6848584 6940548 + Vvi15g168 Vvi15g168 776860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g168 730 CDD LbH_eIF2B_epsilon 340 418 - -
Vvi15g168 730 Gene3D Hexapeptide repeat proteins 329 448 - -
Vvi15g168 730 SMART 542_3 641 728 IPR003307 GO:0005515
Vvi15g168 730 Pfam Nucleotidyl transferase 24 166 IPR005835 GO:0009058|GO:0016779
Vvi15g168 730 Gene3D - 555 730 - -
Vvi15g168 730 SUPERFAMILY Nucleotide-diphospho-sugar transferases 20 368 IPR029044 -
Vvi15g168 730 SUPERFAMILY Trimeric LpxA-like enzymes 267 428 IPR011004 -
Vvi15g168 730 ProSiteProfiles W2 domain profile. 557 730 IPR003307 GO:0005515
Vvi15g168 730 MobiDBLite consensus disorder prediction 533 562 - -
Vvi15g168 730 SUPERFAMILY ARM repeat 567 725 IPR016024 -
Vvi15g168 730 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 9 730 - -
Vvi15g168 730 CDD eIF-2B_epsilon_N 22 238 IPR035543 -
Vvi15g168 730 CDD W2_eIF2B_epsilon 567 730 IPR044123 GO:0005085|GO:0031369
Vvi15g168 730 Pfam eIF4-gamma/eIF5/eIF2-epsilon 653 730 IPR003307 GO:0005515
Vvi15g168 730 MobiDBLite consensus disorder prediction 533 548 - -
Vvi15g168 730 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 8 302 IPR029044 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g168 K03240 - vvi:100248224 1436.01