Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi15g190 | ATGGCACGGCAGAAGATTCAGATCAAGAAGATTGACAACACAGCAGCAAGGCAAGTGACCTTCTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCACAGGAGCTCTCAATACTGTGTGATGCCGAGATAGCGCTTATTGTCTTCTCAGCAGCAGGAAAGCTCTTTGAGTATTCAAGCTCAAGTGTGAGCCAGGTGATTGGAAGGCACAATCAGCATCCACAGACTCCAGGGAAACCAGAACCACCATCTCTGGAGCTGCAGCTGGAGAACAGCACCTGTGCAGCCTTGAGCAAAGAAATTGCCCAGCAGACTCAGAGGCTGAGGCAAATGAAAGGAGAAGAGCTCCAGGTATTAAAAATAGAAGAATTGACTGAACTAGAGGAATTACTTGAAGCTGGTCTGTGCAACGTCGTGGAAGAAAAGGAAGAAAGAATTCGAACAGAGATCAGTGATCTCCAGAGAAAGGGAGACCTACTGCAGGAAGAGAATGAAAGGTTGAGAAAGGAGATGGAGAATATTTTTGAAGCACAACCTCTTCTTTAA | 543 | 45.67 | MARQKIQIKKIDNTAARQVTFSKRRRGLFKKAQELSILCDAEIALIVFSAAGKLFEYSSSSVSQVIGRHNQHPQTPGKPEPPSLELQLENSTCAALSKEIAQQTQRLRQMKGEELQVLKIEELTELEELLEAGLCNVVEEKEERIRTEISDLQRKGDLLQEENERLRKEMENIFEAQPLL* | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 8055954 | 8088281 | + | Vvi15g190 | Vvi15g190 | 776882 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi15g190 | 180 | Coils | Coil | 123 | 176 | - | - | |
Vvi15g190 | 180 | PANTHER | - | 1 | 177 | - | - | |
Vvi15g190 | 180 | Coils | Coil | 93 | 113 | - | - | |
Vvi15g190 | 180 | SUPERFAMILY | SRF-like | 3 | 76 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi15g190 | 180 | Gene3D | - | 13 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi15g190 | 180 | Pfam | K-box region | 92 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Vvi15g190 | 180 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi15g190 | 180 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Vvi15g190 | 180 | CDD | MADS_MEF2_like | 2 | 73 | IPR033896 | GO:0000977|GO:0045944 | |
Vvi15g190 | 180 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi15g190 | 180 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi15g190 | 180 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi15g190 | 180 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi15g190 | 180 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi15g190 | 180 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 177 | - | - | |
Vvi15g190 | 180 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14044 | PF01486 | K-box | 8.10E-14 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi15g190 | - | - | vvi:100265532 | 335.495 |