Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g190 ATGGCACGGCAGAAGATTCAGATCAAGAAGATTGACAACACAGCAGCAAGGCAAGTGACCTTCTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCACAGGAGCTCTCAATACTGTGTGATGCCGAGATAGCGCTTATTGTCTTCTCAGCAGCAGGAAAGCTCTTTGAGTATTCAAGCTCAAGTGTGAGCCAGGTGATTGGAAGGCACAATCAGCATCCACAGACTCCAGGGAAACCAGAACCACCATCTCTGGAGCTGCAGCTGGAGAACAGCACCTGTGCAGCCTTGAGCAAAGAAATTGCCCAGCAGACTCAGAGGCTGAGGCAAATGAAAGGAGAAGAGCTCCAGGTATTAAAAATAGAAGAATTGACTGAACTAGAGGAATTACTTGAAGCTGGTCTGTGCAACGTCGTGGAAGAAAAGGAAGAAAGAATTCGAACAGAGATCAGTGATCTCCAGAGAAAGGGAGACCTACTGCAGGAAGAGAATGAAAGGTTGAGAAAGGAGATGGAGAATATTTTTGAAGCACAACCTCTTCTTTAA 543 45.67 MARQKIQIKKIDNTAARQVTFSKRRRGLFKKAQELSILCDAEIALIVFSAAGKLFEYSSSSVSQVIGRHNQHPQTPGKPEPPSLELQLENSTCAALSKEIAQQTQRLRQMKGEELQVLKIEELTELEELLEAGLCNVVEEKEERIRTEISDLQRKGDLLQEENERLRKEMENIFEAQPLL* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8055954 8088281 + Vvi15g190 Vvi15g190 776882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g190 180 Coils Coil 123 176 - -
Vvi15g190 180 PANTHER - 1 177 - -
Vvi15g190 180 Coils Coil 93 113 - -
Vvi15g190 180 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Vvi15g190 180 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Vvi15g190 180 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi15g190 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi15g190 180 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi15g190 180 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Vvi15g190 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi15g190 180 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi15g190 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi15g190 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi15g190 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi15g190 180 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 177 - -
Vvi15g190 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14044 PF01486 K-box 8.10E-14 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g190 - - vvi:100265532 335.495