Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g2 ATGGCTGCTCAGGCCTTGGTTTCATCTTCTCTTACTTCCTCAGTGGAGACTGCCAGACAGATACTTGGGTCAAGGCCTCTGCAATCTCCATCAAGGAAGTCTTCTTCCTTTGTGGTCAGGGCAGCTTCTACTCCACCAGTCAAGCAAGGAGCTGACAGGCCCCTCTGGTTTGCATCCAAGCAGAGCCTTACTTACTTGGATGGCAGTCTTCCAGGTGACTATGGGTTCGATCCACTGGGACTTTCAGACCCTGAAGGCACAGGAGGGTTCATCGAGCCAAGATGGTTAGCCTACGGGGAGGTCATCAACGGGCGATTCCAAGACTGGGCCAACCCAGGGTCAATGGGGAAGCAGTACTTCCTCGGGCTTGAAAAATACTTGGGAGGGTCTGGCGACCCAGCCTACCCAGGAGGCCCACTGTTCAACCCTCTCGGGTTTGGTAAAGATGAGAAATCCCTCAAGGATCTGAAGCTCAAAGAGGTTAAGAATGGGAGATTGGCTATGTTGGCCATATTGGGCTACTTTGCACAAGGGCCTGTGACAGGAGTCGGGCCCCTCCAAAACCTGCTGGACCATTTGGCAGACCCTGTCAACAACAATATCATAACCAGCCTCAAGTTCCACAACTAG 630 52.7 MAAQALVSSSLTSSVETARQILGSRPLQSPSRKSSSFVVRAASTPPVKQGADRPLWFASKQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFQDWANPGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSLKFHN* 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 124039 125348 + Vvi15g2 Vvi15g2 776694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g2 209 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 105 207 - -
Vvi15g2 209 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 106 - -
Vvi15g2 209 SUPERFAMILY Chlorophyll a-b binding protein 52 204 - -
Vvi15g2 209 Pfam Chlorophyll A-B binding protein 64 106 IPR022796 -
Vvi15g2 209 Pfam Chlorophyll A-B binding protein 112 177 IPR022796 -
Vvi15g2 209 Gene3D Chlorophyll a/b binding protein domain 109 204 - -
Vvi15g2 209 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 106 IPR001344 GO:0009765|GO:0016020
Vvi15g2 209 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 105 207 IPR001344 GO:0009765|GO:0016020
Vvi15g2 209 Gene3D Chlorophyll a/b binding protein domain 55 108 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g2 K08909 - aof:109840150 308.916