Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g231 ATGCACGTTGAGGACCTAGAGTTGGCTTTGATACCATGTGAAATTCTGAATTATTCTTATTCACAAAAATCAAGAGATACACTAGAATATATATATGCACATGGGGGAAGCATGGAGAGCAGCGGACTGGGGGATTTGTTTGATTCAAATATTAACCACTTGACAACTTCTCATTTTGCTTTCCTTCGTCATTGGGATTGGTTAATCGACTTAGAAGCTAAAGAGATGGAGGTCATGAAGAAAGGCATTTGGCGTTCACATAGTTTAAAAAGAGATCCCTCAACTAGTTGCTTATCTTCTATTGTTCTTGATACTTCAAATAAACACCCACAGAAAAACTCGTTTAAGGACAACAAATTCATTTACCGATTTGTGCGTCAAAATGTACCTAGTTTTCATGTGAAAGAGCATAATGAAGATTCTTTGCCTTCTGTCTCTTCTCCTGCAAATGATTTGGATTGCACACTTAGAAATGGGGATTATGTGATACTTAGCACTGAATCTGGACATCTAGCACTTGCAAGTGGAGTCATAACAGATATCAGTCGCTTCCATGTCTATGTTTGTTTTTCCAAACGCTTAAGGCTTCCTTGGAGCAAAAGATCTTCAGAGGAACAGGATCTCCTTGGTGAGGTCTTTCGGATCAACAAGGATGAGATTGTTACTTCATTTGCAGTTATGAGGTTCAACCTTATACAACTCTTTCTACAAAGCATGCAAGGTTCTCATCTTAGGAAGATGATTGTTGACCTTGAGGTTCCTAGATTTGATGGTGGCTGCATATTCAGTCAAGATCCAGCAATATCTTATATACGTTCTGAAAAGAGTTTGAATAATGATCAACGCCAAGCCATACTCAAGATACTCACAGCAAAGGATTATGCTCTAATTTTAGGAATGCCTGGAACAGGCAAGACATCCACTATGGTGCATGCTGTGAAGGCCTTGTTGATGAGAGGTGCATCCATTTTGCTTACGTCCTACACAAACTCAGCTGTTGATAATTTACTAATCAAATTAAAAGCTCAGAACATAGATTTTGTGCGTATTGGAAGACATGAAGTGGTGCATGAAGAAATTCAAGGGCATTGCTTTTCAGGAATGGACATACATAGTGTTGAAGACATTAAACTAAGATTAGACCAAGTCAGCGTTGTTGCAGTTACTTGTTTGGGGATAACTAATCCCTTGCTTGCCAACAAGAGGTTTGACATATGCATCATGGATGAAGCTGGGCAGACCACCCTCCCAGTATCCTTGGGGCCCTTGATGTTTGCTTCAATATTTGTCCTTGTTGGAGATCATTATCAACTACCTCCACTTGTTCAGAGTGCTGAGGCTCGGGAAAATGGAATGGGAATAAGCCTGTTTTGCAGGCTCTCAGAAGCACACCCTCAAGCAATTTCGGCATTGCAGAGCCAGTACCGCATGTGTCAAAGCATTATGGCACTATCAAATGCCTTGATATATGGTAACAGACTGCGTTGTGGTTCCTCACAAATAGCGAATGCAAGGCTCAAGTTTTCAAGTTCAAATTCTATTTCATCATGGCTAAAGGAGGCTTTGGATCCTGAAAGACCGGTTATATTTATTAATACAGATATGTTGTCAGCTTTTGAGGCAAAGGATCACAAGACTGTTAATAACCCAATTGAAGCTTGCATCATTTCAGAGGTGGCAGAAGAATTGGTCAACAATGGCATTGAAGGGGAAGATATTGGCATCATTACACCCTATAACTCACAGGCAAATCTCATCCGACATACTGTTTCCACGACCTCTGTGGAGATAAATACTATTGATAAATACCAGGGAAGGGATAAAGACTGCATTCTGGTGTCATTTGTAAGGTCCAGTGAAAATCCAAGGAATTGTACTTCATCGCTGCTTGGTGACTGGCATAGGATTAACGTGGCGCTTACACGTGCCAAGAGGAAGTTAATCATGGTAGGTTCATTTAGAACCCTCTCTAAAGTACCACTGTTGAGGCTTCTCATTGAGAAGGTTGAGGAGCAGTCTGGCAGATTAAATGTTTCCTTGAAGGATATCAACTACAAGGGAGAGCTGAAAAGATGTTCCCAGTTGAGATGA 2091 40.6 MHVEDLELALIPCEILNYSYSQKSRDTLEYIYAHGGSMESSGLGDLFDSNINHLTTSHFAFLRHWDWLIDLEAKEMEVMKKGIWRSHSLKRDPSTSCLSSIVLDTSNKHPQKNSFKDNKFIYRFVRQNVPSFHVKEHNEDSLPSVSSPANDLDCTLRNGDYVILSTESGHLALASGVITDISRFHVYVCFSKRLRLPWSKRSSEEQDLLGEVFRINKDEIVTSFAVMRFNLIQLFLQSMQGSHLRKMIVDLEVPRFDGGCIFSQDPAISYIRSEKSLNNDQRQAILKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNSAVDNLLIKLKAQNIDFVRIGRHEVVHEEIQGHCFSGMDIHSVEDIKLRLDQVSVVAVTCLGITNPLLANKRFDICIMDEAGQTTLPVSLGPLMFASIFVLVGDHYQLPPLVQSAEARENGMGISLFCRLSEAHPQAISALQSQYRMCQSIMALSNALIYGNRLRCGSSQIANARLKFSSSNSISSWLKEALDPERPVIFINTDMLSAFEAKDHKTVNNPIEACIISEVAEELVNNGIEGEDIGIITPYNSQANLIRHTVSTTSVEINTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKRKLIMVGSFRTLSKVPLLRLLIEKVEEQSGRLNVSLKDINYKGELKRCSQLR* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9585338 9605595 - Vvi15g231 Vvi15g231 776923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g231 696 CDD DEXXQc_DNA2 276 476 - -
Vvi15g231 696 Gene3D - 475 686 IPR027417 -
Vvi15g231 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 662 IPR027417 -
Vvi15g231 696 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2 23 671 IPR026851 GO:0017108|GO:0017116|GO:0033567
Vvi15g231 696 Pfam AAA domain 277 365 IPR041677 GO:0004386
Vvi15g231 696 Pfam AAA domain 377 444 IPR041677 GO:0004386
Vvi15g231 696 CDD SF1_C_Upf1 477 670 IPR041679 -
Vvi15g231 696 Pfam AAA domain 454 652 IPR041679 -
Vvi15g231 696 PANTHER DNA2/NAM7 HELICASE FAMILY 23 671 IPR045055 -
Vvi15g231 696 Gene3D - 374 474 IPR027417 -
Vvi15g231 696 Gene3D - 210 373 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g231 K10742 - vvi:100247844 1308.51