Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g233 ATGGCTCCCAGGAAGAAACCCAGCTCCAAATCAAACCAAAACCAACCTAACTCTCAGCCTTCCAAGTTCGGCATCCAACACTTCTTCCTTCGCCACTCCCAATCTTCCACCTCTCGCCCTAACGACGCTGTTTGCACCCCCGGCCCTAATCCACCATCACAGTCTGCTCCACCCCTTCAAAATCCTACAGCTGCTTGTCCTGAAAATAGTACGCCTCCTGGGAATATTCCAGCAATGGCTGTGGATGTTGAGGAGAACCCTTCTCAGGTGTCACCTGAGGTTTCCAAGTCCATGGCACTTAAGCGGTTCAAGTTCTCGCCTGGAATGTTGATAAAGCAAAGCCAGGATGATGGAAGTGACGAGGTGACATGGAAGATCTCTCCTGTGAATGAGCGGCTTCAAGCAATGACGAAGAAGCATGGCCCAGAGTGGCTTTGTTCCCCAACAATGAAAGCTTCTGAAAAATCTGTGGTATTCTCGAATAGGGTTAGCTTAAAAAAGGTGAAACTGGGTCAAGTCATGGATTCCAATGGAAATGAAATTGATATGACTGACCCAGGTGTGGTAAGAAAAAGACAAAGTCCTTTTCGAACTCCACCATCTTTATCATATTGCCACGAGAAGAATATTGATGGTGTTGATTGCAAATTGGTATCTGACCAGATGGGCTTAAGGCAACACAAAAAGGCATTGCTTGAACTTTTGGATCAAGTAGAAGATGCCATTTCTGTTGAAGAATCAGTATCTAGTGATGGAGAGGCATGTTTATCCAAAGTCCAGTGCATAAATGGTGATGAGATGCCTCTTAGAGTTGATCCTGCATTAAAGATACCAGAGATGGGTCCAACAGAAAAGGTCAATGGGGAATGTTCCAACATTATTTTTCTTGTTTTGGAGGTTTCTGAGAAGCGGGAATATGCTGATTTATCTGGTGCACAGTGTCCTTCTAAGGTACTTCGCTTACTGAATGAGAAAACTGGAGAAGAGCAGGCTGTGTATTTGAGGGATGAGTGGTTTTATTCTGTCATTGCTCCTGGAGATACTATACATGTAATCGGTAAATTTGATGACCAGGGAAAGTGTGATGTAGACCATGACAACAACTTTCTAATTGTTCACCCTGATATACTGGTGTCTGGCACTCGGGTAGCTGCTAGTTTCAGTTGCTCAAGACGAACTGTCCTGGATGAGAGGCTAAAATGCAGTGAACATTCAACTGCAGCATTGATAGGTACCTTGCTGCACCAAATTTTTCAGGCCGGACTTATTAGAGAGATTCCTACAAAAGTTTTCTTGGAGGAGTATGCAAGAATAGTGGTTCAGAAAAATCTTGAGAGCTTGTATGCATGTGGAGTAAATGAAGATGATATGTATAAAACTTTGATTGAGGCAACTCCAAGAATACTAAACTGGATCGTCCTCTTCAAGAATTCACAGGAGTATAGAGGTGCTACTGTTGATTTTGGATCTGATGATGGCTTGAAAAGGGTGAATGTATCTGAGGTAATAGATATTGAGGAAATGGCATGGGCCCCAAAATATGGCTTGAAAGGGATGATTGACGCTTCTCTTCGAATAAAATTTGAATCAAACACCAAGGAAGTGAATGAGATAATCATGCCTTTAGAGTTTAAAACTGGGAAAGGAACTAAAGGCCAGGCAACCATGGAACACACTGCACAGGTGATCTTGTACACTCTCCTTATGTCTGAGAGGTATCTGAAACCTATTGATTCTGGACTTCTCTATTATCTCAATACAGACCATACACAGGGCATTGCAGTTAAAAGATCAGACTTGGTTGGTCTAATTATGCGTCGCAATGAACTTGCAAAAGATATTCTAAAGGCATCAATGATGCAGCAACTGCCTCCAATGTTGCAGAGTCCAAGCATGTGCAAAAGTTGTCGCCATCTTAATGCTTGTACAATCTATCATAAGATGGGAAAATATTGCTTACTTCAAACTTTTGTTTTAACAAAAAATTCCAAGTTACCCTTGTATAGTCATCAATGA 2016 42.16 MAPRKKPSSKSNQNQPNSQPSKFGIQHFFLRHSQSSTSRPNDAVCTPGPNPPSQSAPPLQNPTAACPENSTPPGNIPAMAVDVEENPSQVSPEVSKSMALKRFKFSPGMLIKQSQDDGSDEVTWKISPVNERLQAMTKKHGPEWLCSPTMKASEKSVVFSNRVSLKKVKLGQVMDSNGNEIDMTDPGVVRKRQSPFRTPPSLSYCHEKNIDGVDCKLVSDQMGLRQHKKALLELLDQVEDAISVEESVSSDGEACLSKVQCINGDEMPLRVDPALKIPEMGPTEKVNGECSNIIFLVLEVSEKREYADLSGAQCPSKVLRLLNEKTGEEQAVYLRDEWFYSVIAPGDTIHVIGKFDDQGKCDVDHDNNFLIVHPDILVSGTRVAASFSCSRRTVLDERLKCSEHSTAALIGTLLHQIFQAGLIREIPTKVFLEEYARIVVQKNLESLYACGVNEDDMYKTLIEATPRILNWIVLFKNSQEYRGATVDFGSDDGLKRVNVSEVIDIEEMAWAPKYGLKGMIDASLRIKFESNTKEVNEIIMPLEFKTGKGTKGQATMEHTAQVILYTLLMSERYLKPIDSGLLYYLNTDHTQGIAVKRSDLVGLIMRRNELAKDILKASMMQQLPPMLQSPSMCKSCRHLNACTIYHKMGKYCLLQTFVLTKNSKLPLYSHQ* 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9607466 9631231 - Vvi15g233 Vvi15g233 776925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g233 671 Pfam DNA replication factor Dna2 324 525 IPR014808 -
Vvi15g233 671 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 166 607 - -
Vvi15g233 671 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 6 48 - -
Vvi15g233 671 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 63 139 - -
Vvi15g233 671 PANTHER DNA2/NAM7 HELICASE FAMILY 166 607 IPR045055 -
Vvi15g233 671 PANTHER DNA2/NAM7 HELICASE FAMILY 6 48 IPR045055 -
Vvi15g233 671 PANTHER DNA2/NAM7 HELICASE FAMILY 63 139 IPR045055 -
Vvi15g233 671 MobiDBLite consensus disorder prediction 1 76 - -
Vvi15g233 671 MobiDBLite consensus disorder prediction 1 44 - -
Vvi15g233 671 Pfam Domain of unknown function DUF83 536 643 IPR022765 -
Vvi15g233 671 Gene3D - 379 643 IPR011604 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g233 K10742 - vvi:100247844 1142.1