Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g299 ATGGATCATCATCATCATCAAGGAGAAAGATCTGGGGTTCCAAATTATGAGCTTCAGGTGTCTTATTCTACTACTCCTCAAGGCATCCATGAAATGGGGTTTGTGCAGTTTGAGGAGAACCAGGTGCTGAGTTTCTTGGCACCATCACAGTCTGCTCAGATGTCTCAGCCTCTCAACACTGCTAGCACATCCACACCCACACCCACACCCACCAACACCACTACTAATACAACCATGGGCTTTACTCACAATGATCTTCTCACCAGACCTTCTTGGAATAATGAGCAGGTGGGGACATTGGATCCGAAGGCTGTGAATGAAGAGAATTGCACTGGTAATGCCAACGATGGAAGCAATTCATGGTGGAGGAGCTCATCCTCAGAAAAGACCAAAGTGAAGGCGAGGAGAAAGCTTAGAGAGCCAAGGTTCTGTTTTCAAACTAGAAGCGAGGTGGATGTGCTCGACGATGGTTACAAATGGAGAAAATATGGCCAGAAAGTCGTCAAGAATAGCCTTCATCCAAGAAGTTATTATCGTTGTACTCATACAAACTGTCGAGTGAAGAAGAGGGTGGAGCGGTTATCAGAAGATTGTCGGATGGTGATAACAACATATGAAGGTAGACACAACCACTCTCCTTGTGACGACTCCAATTCATCTGAACACGAATGTTTCACTTCATTCTGA 687 45.27 MDHHHHQGERSGVPNYELQVSYSTTPQGIHEMGFVQFEENQVLSFLAPSQSAQMSQPLNTASTSTPTPTPTNTTTNTTMGFTHNDLLTRPSWNNEQVGTLDPKAVNEENCTGNANDGSNSWWRSSSSEKTKVKARRKLREPRFCFQTRSEVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHTNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFTSF* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 11498969 11504729 + Vvi15g299 Vvi15g299 776991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g299 228 Pfam WRKY DNA -binding domain 155 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g299 228 SUPERFAMILY WRKY DNA-binding domain 146 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi15g299 228 Gene3D WRKY domain 140 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi15g299 228 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 20 226 IPR044810 GO:0003700
Vvi15g299 228 MobiDBLite consensus disorder prediction 53 79 - -
Vvi15g299 228 ProSiteProfiles WRKY domain profile. 149 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g299 228 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 20 226 - -
Vvi15g299 228 SMART WRKY_cls 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14046 PF03106 WRKY 1.90E-24 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g299 - - vvi:100254670 436.802