Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi15g299 | ATGGATCATCATCATCATCAAGGAGAAAGATCTGGGGTTCCAAATTATGAGCTTCAGGTGTCTTATTCTACTACTCCTCAAGGCATCCATGAAATGGGGTTTGTGCAGTTTGAGGAGAACCAGGTGCTGAGTTTCTTGGCACCATCACAGTCTGCTCAGATGTCTCAGCCTCTCAACACTGCTAGCACATCCACACCCACACCCACACCCACCAACACCACTACTAATACAACCATGGGCTTTACTCACAATGATCTTCTCACCAGACCTTCTTGGAATAATGAGCAGGTGGGGACATTGGATCCGAAGGCTGTGAATGAAGAGAATTGCACTGGTAATGCCAACGATGGAAGCAATTCATGGTGGAGGAGCTCATCCTCAGAAAAGACCAAAGTGAAGGCGAGGAGAAAGCTTAGAGAGCCAAGGTTCTGTTTTCAAACTAGAAGCGAGGTGGATGTGCTCGACGATGGTTACAAATGGAGAAAATATGGCCAGAAAGTCGTCAAGAATAGCCTTCATCCAAGAAGTTATTATCGTTGTACTCATACAAACTGTCGAGTGAAGAAGAGGGTGGAGCGGTTATCAGAAGATTGTCGGATGGTGATAACAACATATGAAGGTAGACACAACCACTCTCCTTGTGACGACTCCAATTCATCTGAACACGAATGTTTCACTTCATTCTGA | 687 | 45.27 | MDHHHHQGERSGVPNYELQVSYSTTPQGIHEMGFVQFEENQVLSFLAPSQSAQMSQPLNTASTSTPTPTPTNTTTNTTMGFTHNDLLTRPSWNNEQVGTLDPKAVNEENCTGNANDGSNSWWRSSSSEKTKVKARRKLREPRFCFQTRSEVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHTNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFTSF* | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 11498969 | 11504729 | + | Vvi15g299 | Vvi15g299 | 776991 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi15g299 | 228 | Pfam | WRKY DNA -binding domain | 155 | 211 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi15g299 | 228 | SUPERFAMILY | WRKY DNA-binding domain | 146 | 212 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi15g299 | 228 | Gene3D | WRKY domain | 140 | 214 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi15g299 | 228 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 20 | 226 | IPR044810 | GO:0003700 | |
Vvi15g299 | 228 | MobiDBLite | consensus disorder prediction | 53 | 79 | - | - | |
Vvi15g299 | 228 | ProSiteProfiles | WRKY domain profile. | 149 | 211 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi15g299 | 228 | PANTHER | WRKY TRANSCRIPTION FACTOR 12-RELATED | 20 | 226 | - | - | |
Vvi15g299 | 228 | SMART | WRKY_cls | 154 | 213 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14046 | PF03106 | WRKY | 1.90E-24 | CL0274 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi15g299 | - | - | vvi:100254670 | 436.802 |