Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g315 ATGGAAAGAATTCCAGAGTCAAAGAAAACGCTTCCTGGGCAATTGCCAATTGTGGGTCTGGTAGCAAAACAACACATGGCTTTGCTAAGGCAAGAAGTCGGTCGGCCTGATGCACGGGATTCTCAAGATTCAGACTCTTCTCCTGCACCAATAAGGACGTGGAAAGGAAAGGATTCTTTACTTGAGCAAGAGGAGTCGATGCCTGATGTTGTTAAGGGCAGTAGTGATTCATTTGAGGAAGGTGGCCCTAGCTCTTTCTCTGGGGCTAGTCATCCCCCAGAACCCGTAGATACAGATCCGATGAGAACAGTGTATGTACCAATTGGTCAGAAGAAGTCTGAGGAAAAGGAATGTGTTTGGGATGCTTCTTTGCCTCCAAGTGGCAATGTAAGTCCACACAGTAGCATTGATAGCACTGGTGTTGTCACAGCCATGAGCATTGTCAATAGCTGTGCCAGTACATACAGGAGGGATTCACTTGAGAGTGCAAAAACTAGCATTAGCCGTGCAAGCGATAGCAGTGGCCTTAGTGATGATAGTAATTGGAGTAACATTACTGGTAGTGCTAATAAGCCACACAAAGGAAATGATCCTAGATGGAAGGCCATTCTTGCCATCCGTGCACGAGATGGCATTTTGGGTATGAGTCATTTTAGGTTGCTCAGACGGCTTGGGTGTGGTGATATTGGCAGTGTGTATCTCTCGGAGTTGAGTGGTACACGCTGTTACTTTGCAATGAAAGTAATGGATAAGGCATCTCTTGCAAGCCGAAAAAAATTGACCAGAGCTCAGACAGAAAGAGAGATTCTGCAGCTACTAGACCATCCATTCCTACCAACTCTTTACACTCATTTTGAGACAGACAGATTCTCATGTTTGGTCATGGAATTTTGTCCGGGAGGTGATCTTCACACTCTAAGGCAACGACAACCTGGGAAACATTTCTCTGAGTATGCTGCCCGGTTTTATGCTGCAGAGGTTCTATTAGCACTTGAGTATCTCCACATGCTTGGAGTTGTCTACCGGGATTTGAAACCAGAAAATGTTTTAGTCCGTGATGATGGCCACATAATGCTCTCAGATTTTGACCTTTCCCTAAGATGTGCAGTTTCACCCACCCTTATTAAAACCTCCTCATTTGATTCTGACCCCTCCAAACGGGGAACTGGTGGTGCATTCTGTGTCCAGCCTGCCTGTATTGAACCCTCATCAGTATGCATCCAGCCAGCATGTTTTATTCCCCGGATCTTTCCCCAGAAGAATAGTAAGAAAAAAACTAGAAGACCACGAGCTGAGCCTGGGCTGCCTGCCAGTACATTGCCTGAGCTTGTGGCAGAGCCTACTGCAGCTCGGTCCATGTCCTTTGTTGGGACCCATGAATACCTTGCTCCTGAAATCATCAAGGGAGAAGGGCATGGCAGTGCAGTTGATTGGTGGACATTTGGTATCTTCTTGCATGAACTACTGTATGGTAAAACCCCTTTCAAGGGTTCAGGAAACCGGGCTACCCTTTTCAATGTGGTGGGGCAACAGCTCAGATTTCCTGATGCACCAGCGACTAGTTATGCAAGTCGGGATCTAATCCGGGGATTACTGGTGAAGGAGCCACAGCACAGACTGGGTGTGAAGAGGGGAGCAACTGAGATAAAGCAGCACCCCTTCTTTGAAGGCGTGAATTGGGCTCTGATACGATGCAGCACGCCGCCAGAGATTCCAAGACCAGTGGAAACAGAGCTACCAGGAAAGTTTGGGACAGTTGACACTGTTGGGGTCGGGATCGGCAGCAGTAGTAAGAGGATGGTAGGGGCAGACATGAAGTCTGGGGGTAAATATCTCGACTTTGAGTTCTTCTAG 1854 47.41 MERIPESKKTLPGQLPIVGLVAKQHMALLRQEVGRPDARDSQDSDSSPAPIRTWKGKDSLLEQEESMPDVVKGSSDSFEEGGPSSFSGASHPPEPVDTDPMRTVYVPIGQKKSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRRDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLRRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEFCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSFDSDPSKRGTGGAFCVQPACIEPSSVCIQPACFIPRIFPQKNSKKKTRRPRAEPGLPASTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDAPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEIPRPVETELPGKFGTVDTVGVGIGSSSKRMVGADMKSGGKYLDFEFF* 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12130591 12138792 + Vvi15g315 Vvi15g315 777007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g315 617 MobiDBLite consensus disorder prediction 31 101 - -
Vvi15g315 617 MobiDBLite consensus disorder prediction 162 195 - -
Vvi15g315 617 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 111 160 - -
Vvi15g315 617 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 114 - -
Vvi15g315 617 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 156 617 - -
Vvi15g315 617 Gene3D Transferase(Phosphotransferase) domain 1 302 377 - -
Vvi15g315 617 ProSiteProfiles Protein kinase domain profile. 218 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g315 617 SMART serkin_6 218 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g315 617 Pfam Protein kinase domain 452 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g315 617 Pfam Protein kinase domain 219 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g315 617 CDD STKc_phototropin_like 216 574 - -
Vvi15g315 617 Gene3D Phosphorylase Kinase; domain 1 216 301 - -
Vvi15g315 617 MobiDBLite consensus disorder prediction 162 191 - -
Vvi15g315 617 PANTHER FLIPPASE KINASE 1-RELATED 111 160 - -
Vvi15g315 617 PANTHER FLIPPASE KINASE 1-RELATED 156 617 - -
Vvi15g315 617 PANTHER FLIPPASE KINASE 1-RELATED 1 114 - -
Vvi15g315 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 339 351 IPR008271 GO:0004672|GO:0006468
Vvi15g315 617 Gene3D Transferase(Phosphotransferase) domain 1 451 572 - -
Vvi15g315 617 SUPERFAMILY Protein kinase-like (PK-like) 200 576 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76239 PF00069 Pkinase 3.30E-36 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g315 - - vvi:100244501 1035.02