Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g325 ATGGATGAGAAGTCGATTGCCCTCGACGAGGCTATAAACAAGGAAGCTGTTGATCTGGAGAATATACCCCTTGAAGAAGTTTTTGAACATCTTAAATGTACTAGAGAGGGTCTCAGCCATGAAGCGTTTCAACAACGGTTGGATCTGTTTGGGTACAATAAACTTGAAGAAATAAAGGAAAACAAAATACTGAAGTTTTTGGGATTTATGTGGAATCCTCTGTCATGGGTCATGGAAGCAGCAGCTGTAATGGCTATTGCTCTTGCACATGGAGGAGGCAAGCCTACAGATTATCATGATTTTGTTGGGATCATCATCTTACTTATTGTCAATTCTACAATCAGTTTCGTAGAGGAAAACAATGCAGGAAATGCAGCAGCTGCTCTTATGGCTCGGTTGGCCCCAAAAGCAAAGGTCTTACGTGATGGGAAATGGAGTGAGGAAGATGCAGCAGTGTTGGTTCCTGGAGACATAATCAGTATCAAACTTGGGGACATCATTCCTGCAGATGCACGTCTTCTTGAAGGAGATCCCCTAAAGATTGATCAGTCTGCCCTAACTGGAGAATCGCTTCCTGTAACCAAGAATCCTGGTGATGGAGTCTACTCAGGTTCAACATGTAAGCAAGGTGAAATTGAAGCAGTAGTTATTGCAACTGGAGTTCATACTTTCTTTGGGAAGGCAGCCCACCTTGTGGAAACCACTACACATGTTGGCCATTTTCAAAAGGTTTTAACAGCAATCGGAAACTTCTGCATTTGCTCAATTGCTTTTGGGATGGCTATTGAAATCGTAGTGATATATGGGCTTCAGGAGAGGGAATATCGTGTTGGTATCGATAACCTGCTTGTTCTACTGATTGGTGGGATCCCAATTGCAATGCCAACTGTTCTTTCTGTTACAATGGCTATAGGTTCTCATCGGTTATCTCAGCAGGGTGCTATAACGAAGCGAATGACTGCCATTGAGGAAATGGCTGGAATGGATGTGCTATGCAGTGACAAAACAGGCACCTTGACACTTAACAAACTCACTGTGGACAAGAATATGATCGAGGTTTTTGCCAAAGGGGTTGACAAGGATATGGTTGTACTCATGGCTGCAAGGGCATCAAGATTAGAAAACCAAGATGCCATTGATGCCGCAATTGTTTCAATGTTAGCAGACCCTAAAGAGGCACGAGCTGGGATAACGGAAATTCACTTCCTCCCATTCAATCCAACCGATAAAAGGACGGCGCTTACATACATAGATGGTGCTGGTAAAATGCATAGAGTGAGCAAAGGTGCACCAGAGCAGATTCTCAATCTAGCTCATAACAAATCAGAAATTGAGAGGAAGGTACATTCAATAATTGACAAGTTTGCAGAACGTGGCCTTCGATCCCTAGGTGTTGCCCGCCAGGAAGTACCTGCTGGAAACAAAGAGAGTTCTGGTGCCCCATGGGAATTTGTTGGTCTCCTCCCTCTCTTTGATCCTCCTCGCCATGATAGTGCTGAAACAATAAGAAGAGCACTTGATCTTGGAGTTAGTGTCAAAATGATCACAGGTGACCAACTGGCAATTGGTAAGGAAACAGGAAGACGACTTGGAATGGGCACAAACATGTATCCCTCTTCATCTTTGCTTGGTGAAAATAAGGATGAGGCAGTTTCAGCTCTACCAATTGATGACCTCATTGAGAAAGCTGATGGTTTTGCTGGGGTTTTTCCTGAACATAAATATGAGATTGTAAAGAGATTACAAGCAAGAAATCACATCTGTGGAATGACTGGGGATGGAGTAAATGATGCACCTGCATTAAAGAAAGCTGATATAGGAATTGCTGTAGCAGATTCCACTGATGCTGCTCGTGGTGCTTCTGATATAGTTCTAACAGAGCCTGGTTTGAGTGTCATCATCAGTGCCGTCTTAACAAGCCGCGCAATCTTCCAGCGGATGAAAAACTACACGATATATGCTGTCTCTATTACCATACGTATTGTGCTAGGTTTTATGTTGCTGACTTGCTTCTGGGAATTTGACTTCCCTCCTTTTATGGTTCTCGTCATTGCCATTCTTAATGATGGTACCATAATGACAATATCCAAAGACAGGGTCAAGCCTTCTCCACTTCCTGATAGTTGGAAGCTCACTGAAATTTTTACAACTGGGGTTGTTCTTGGAGCTTACCTGGCCCTAATGACAGTTTTTTTCTTCTATGTAACCTATGAAACTAACTTCTTTACGCACCACTTTAACATGACAAATGAAACCATAGCTATTGAGCTTAAAGAACAGTTGGCATCTGCTGTTTATCTTCAAGTCAGCACCATCAGCCAGGCCTTGATATTTGTCACTCGCTCTAGGAACTGGTCATTCACAGAACGACCTGGACTTCTGCTCGTAACAGCCTTTATTATTGCTCAACTGATTGCTACTGTGATATCTGCTACTGCAACCTGGAAATTTGCGGGAATTAGAAAGATTGGGTGGGGTTGGACTGCTATCATTTGGGTGTATAATATTCTGACTTACCTTTTGCTTGATCCAATCAAGTTTGCTGTCCGGTATGCCCTCAGCGGACGAGCCTGGGGTCTGGTGGTAAACCAAAGGACCGCATTCACAAACCAGAAGGACTTTGGCAAGGAAGCCCGTGAGGCTAAATGGGCTGCTGAGCAGCGAACGCTGCATGGCCTACAGTCTGCTGAGATGGCAAGCATGTTCTCGCAGCGCGGCACTTTTAGGGACATTAACCTTATGGCAGAAGAAGCAAGAAGGAGGGCTGAAATCTCAAGGTTGAGAGAGCTTCGCACTCTGAAAGGAAGGGTTGAGTCCTTTGCCAAGCTGAGGGGTCTAGACATTGATTCCAACATCAATCCGCACTACACTGTCTAA 2877 44.04 MDEKSIALDEAINKEAVDLENIPLEEVFEHLKCTREGLSHEAFQQRLDLFGYNKLEEIKENKILKFLGFMWNPLSWVMEAAAVMAIALAHGGGKPTDYHDFVGIIILLIVNSTISFVEENNAGNAAAALMARLAPKAKVLRDGKWSEEDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVETTTHVGHFQKVLTAIGNFCICSIAFGMAIEIVVIYGLQEREYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNMIEVFAKGVDKDMVVLMAARASRLENQDAIDAAIVSMLADPKEARAGITEIHFLPFNPTDKRTALTYIDGAGKMHRVSKGAPEQILNLAHNKSEIERKVHSIIDKFAERGLRSLGVARQEVPAGNKESSGAPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDEAVSALPIDDLIEKADGFAGVFPEHKYEIVKRLQARNHICGMTGDGVNDAPALKKADIGIAVADSTDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLTCFWEFDFPPFMVLVIAILNDGTIMTISKDRVKPSPLPDSWKLTEIFTTGVVLGAYLALMTVFFFYVTYETNFFTHHFNMTNETIAIELKEQLASAVYLQVSTISQALIFVTRSRNWSFTERPGLLLVTAFIIAQLIATVISATATWKFAGIRKIGWGWTAIIWVYNILTYLLLDPIKFAVRYALSGRAWGLVVNQRTAFTNQKDFGKEAREAKWAAEQRTLHGLQSAEMASMFSQRGTFRDINLMAEEARRRAEISRLRELRTLKGRVESFAKLRGLDIDSNINPHYTV* 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12288191 12296641 + Vvi15g325 Vvi15g325 777017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g325 958 SFLD C1.7: P-type atpase like 314 642 - -
Vvi15g325 958 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
Vvi15g325 958 Pfam E1-E2 ATPase 133 311 - -
Vvi15g325 958 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Vvi15g325 958 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Vvi15g325 958 PRINTS P-type cation-transporting ATPase superfamily signature 486 497 - -
Vvi15g325 958 PRINTS P-type cation-transporting ATPase superfamily signature 508 518 - -
Vvi15g325 958 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Vvi15g325 958 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Vvi15g325 958 Gene3D - 906 958 - -
Vvi15g325 958 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 104 352 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi15g325 958 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 566 670 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi15g325 958 Gene3D - 135 219 - -
Vvi15g325 958 SFLD p-type atpase 314 642 IPR044492 -
Vvi15g325 958 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Vvi15g325 958 Gene3D - 329 628 IPR023214 -
Vvi15g325 958 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi15g325 958 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi15g325 958 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi15g325 958 PRINTS H+-transporting ATPase (proton pump) signature 622 647 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi15g325 958 PRINTS H+-transporting ATPase (proton pump) signature 766 787 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi15g325 958 Gene3D - 344 491 IPR023299 GO:0000166
Vvi15g325 958 Pfam haloacid dehalogenase-like hydrolase 328 605 - -
Vvi15g325 958 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 853 IPR023298 -
Vvi15g325 958 CDD P-type_ATPase_H 37 847 IPR006534 GO:0008553|GO:0016021|GO:0120029
Vvi15g325 958 Gene3D - 97 821 - -
Vvi15g325 958 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Vvi15g325 958 SUPERFAMILY HAD-like 328 638 IPR036412 -
Vvi15g325 958 ProSitePatterns E1-E2 ATPases phosphorylation site. 334 340 IPR018303 -
Vvi15g325 958 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 37 811 IPR006534 GO:0008553|GO:0016021|GO:0120029
Vvi15g325 958 PANTHER PLASMA MEMBRANE ATPASE 4 937 - -
Vvi15g325 958 PANTHER CALCIUM-TRANSPORTING ATPASE 4 937 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g541 Vvi15g325 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g325 K01535 - vvi:100246249 1824.29