Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g338 ATGGGTTTGAGAATTCATGTGGGTCTGGTGAGAAGAGTGATTCAAACATGGGATTCTCAGTACTTCAGGGGTGAAACCATGGTTGTAGTTGCTAAAGGAAGCTATGCCCTTGATCAATGGGGCAAACCTGAATCAAGCGTTGATGATAAACCACTGGGATTGCCCGTTCGGAACCTGAAATCGAGAATTAAAGACACTGATTCTACTGAATCTGTGAGCGGGAGTAGGTCTAAATCAAGCTCCAAGACTGGTTCTTCTAAGAGTTCAGGCAAAGTTAGAAATGGGAAATTTGGTAAGTTGGGCCCTCTGAAATTGGAGGAGCAGTTGAAGGACACTGTCGCCTTACCTTCACCTATACCATGGCGTTCAAGATCTGGAAGGATGGAAATGAGAGAAGAAGCAGATTCATTTCATAGTCATTCACATTCTATGCCTCCCTCATTTGAGGAACCTGAGTTTGAACAGCTGCAATCACGGTCCTTTCGGTCCTCAACTCCGTACTCATCTCAAGCTAGTTCTGTCTCTTCTTCACCTAGGAAACTCTCTCCTTCCTCCTCTGCTTCTTCAGAATTGGGGAACTCGAAAATGGAAGAACTGGGGGGAAGGAAGAGTCCTTATGGGTCATCTACTGCAACTTCTCCATCACCACCAGGACAGATGAATGGTAAAGCTCCATTGGATATGTCAAGATCTCACCAATTTTTTAATGACTCTGCTTCTGAGATGAATGCACAGAGAAGCTTTGAAGACGAGAGGAAGGAGCTGAGTAGGAGCAGAAGAGAGGATCAAGTGAACAGTAAAGAGTGGCAGCTGGGTTCTATGAAGTCTGCCATGAAACCTGGACCTCCCAATAAACATTTGTCAAGGGGAAGATCAGTTAGAACATTTAGAGCAAGTGAACTTACCTCAGAAGCAAGGAAAGTGGCAGAGAAGGGTGGAAACCGAATGGATGACAGTGTTGGGAAGACTTATATCAAAGCTGAAGAAGTACCCATGGAAAAATCTGACATGAAACCAAAAGTACTCGGTAATACATCTTATGTAACAAAGCCGCCATTCTCCAAACATCCAAAGGGAGAAATGCAAGAGTCAGAAGATTTGGAGGGTGAGGCTCACAACTTTCGAACAAGCTCAGATGAAGAAGTTGCATCCAACATTGTTGGTGAGGAAGAACCTGTCCCTCATGAGATGAATGCTGAGAAATTGGAGGACTGGGAGTTGGAAATGTGGGATGAGGAATTGTGTTGTGACCTTTCTCAGAGCAGCGGTGTCGGTGCAAATGCCAAAAGGGCTTTGGTAGGAGCAGGAGCTCGCGCTCTTTTTTACCCAACATTGCTGTATAATGTTGTTAGGAACAAGATTCAGCCTGAGTTTCATTGGTGGGATAGGGTTGATGAGTTTATATTGTTAGGTGCCGTGCCTTTTGCTGCTGATGTTCCTTGCCTAAAGAAACTTGGGGTTGGTGGAGTAGTAACTTTAAACGAGTCTTATGAAACTTTGGTCCCGACATTGCTCTATCATGCTCACAGCATTGACCATTTGGTGATTCCCACAAGAGATTATCTCTTTGCTCCATCACTCAATGATACTTGCCGAGCTGTAGACTTCATCTATAGTAATGCATCTCTTGGGAGAATGACATATGTTCATTGCAAGGCTGGTCGGGGCCGCAGCACAACCATTGTTCTCTGTTACCTGGTGGAACACAAACAGATGACACCTGATGCTGCATACAACTATGTGAAATCCATCAGGCCAAGGGTGGTCCTAGCCTCGGCTCAGTGGAAGGCTGTTCAAGACTACTATCTGCAGAAAGTGAAGAAAACTAAAAGTTCTGGCTGCATTAACAACAGAGTCAGAAAGTCTCCATTCTTCCCATCAAAACAATATGGTGTAGCCTTTGATGATGACTCCATTGACATAGTAACAGAGTCAGATCTTGATGGATATGAGTCATATGGCACAAGCTGTGACTCTATAATCATGGTAACACAATCAGAGCTTGATGGATACGACTCAAGCTGTAACTCCAGTACAGTGACCCAAATCTTGCTTCCATGTTTCTGA 2067 44.36 MGLRIHVGLVRRVIQTWDSQYFRGETMVVVAKGSYALDQWGKPESSVDDKPLGLPVRNLKSRIKDTDSTESVSGSRSKSSSKTGSSKSSGKVRNGKFGKLGPLKLEEQLKDTVALPSPIPWRSRSGRMEMREEADSFHSHSHSMPPSFEEPEFEQLQSRSFRSSTPYSSQASSVSSSPRKLSPSSSASSELGNSKMEELGGRKSPYGSSTATSPSPPGQMNGKAPLDMSRSHQFFNDSASEMNAQRSFEDERKELSRSRREDQVNSKEWQLGSMKSAMKPGPPNKHLSRGRSVRTFRASELTSEARKVAEKGGNRMDDSVGKTYIKAEEVPMEKSDMKPKVLGNTSYVTKPPFSKHPKGEMQESEDLEGEAHNFRTSSDEEVASNIVGEEEPVPHEMNAEKLEDWELEMWDEELCCDLSQSSGVGANAKRALVGAGARALFYPTLLYNVVRNKIQPEFHWWDRVDEFILLGAVPFAADVPCLKKLGVGGVVTLNESYETLVPTLLYHAHSIDHLVIPTRDYLFAPSLNDTCRAVDFIYSNASLGRMTYVHCKAGRGRSTTIVLCYLVEHKQMTPDAAYNYVKSIRPRVVLASAQWKAVQDYYLQKVKKTKSSGCINNRVRKSPFFPSKQYGVAFDDDSIDIVTESDLDGYESYGTSCDSIIMVTQSELDGYDSSCNSSTVTQILLPCF* 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12539947 12547221 - Vvi15g338 Vvi15g338 777030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g338 688 MobiDBLite consensus disorder prediction 125 139 - -
Vvi15g338 688 MobiDBLite consensus disorder prediction 40 103 - -
Vvi15g338 688 MobiDBLite consensus disorder prediction 300 320 - -
Vvi15g338 688 ProSiteProfiles Dual specificity protein phosphatase domain profile. 460 607 IPR020422 GO:0006470|GO:0008138
Vvi15g338 688 PANTHER - 397 652 - -
Vvi15g338 688 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8 ISOFORM X1-RELATED 397 652 - -
Vvi15g338 688 Pfam Dual specificity phosphatase, catalytic domain 471 601 IPR000340 GO:0008138|GO:0016311
Vvi15g338 688 MobiDBLite consensus disorder prediction 342 363 - -
Vvi15g338 688 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 452 606 IPR029021 -
Vvi15g338 688 MobiDBLite consensus disorder prediction 244 266 - -
Vvi15g338 688 MobiDBLite consensus disorder prediction 116 320 - -
Vvi15g338 688 ProSitePatterns Tyrosine specific protein phosphatases active site. 549 559 IPR016130 GO:0016311|GO:0016791
Vvi15g338 688 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 528 596 IPR000387 GO:0016311|GO:0016791
Vvi15g338 688 MobiDBLite consensus disorder prediction 153 193 - -
Vvi15g338 688 CDD PTPMT1 460 602 IPR044596 GO:0004721
Vvi15g338 688 Gene3D Protein tyrosine phosphatase superfamily 460 609 IPR029021 -
Vvi15g338 688 SMART dsp_5 463 604 IPR020422 GO:0006470|GO:0008138
Vvi15g338 688 MobiDBLite consensus disorder prediction 205 219 - -
Vvi15g338 688 MobiDBLite consensus disorder prediction 72 92 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g338 - - vvi:104881830 657.521