Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g340 ATGGAAGAAAATGAGTTTTGGATGGTCGACAAGGACGACGACTTAGGCTTGAGTCTAGCCCTAAAATGCCCCGAAGCGCTGCCTCAGAGGCCTCTCAATCTCTTCGTGCAAAAGAAGGCCCTCTGCAGCGACGCGTTTCATGCATCTGAGACGAGAGCGTACCTGAGAGGCATCGATGTGAATCGGGCACCGACGATGGCGGATTGCGAGGATGTTGGGGTGTCGTCGCCAAACAGCACGATATCGAGCATAAGCGGGAAGAGGAATGACAGGGAAACCAACGAAGAAGAGAATGAGAACGAGAATGAGATTGAGAGTTCGGAGGAAGACGCCGGAGGCACCGGGGACACCGTCAGGAAGAAGCTCCGGTTGTCGAAAGAACAGTCGGCGATTCTCGAAGAGACTTTCAAAGAACACAACACTCTCAACCCGAAGCAAAAGTTGGCGCTAGCGAAGCAATTGAATCTGAGGCCGAGGCAGGTGGAAGTTTGGTTTCAGAACAGAAGGGCAAGAACTAAGTTGAAGCAGACGGAGGTGGACTGCGAGTATCTGAAGAGGTGCTGTGAGAATCTAACCGAGGAGAACAGACGGCTGCAGAAGGAGGTGCAGGAGCTGAGAACACTGAAGCTTTCACCACAGCTCTACATGCACATGAACCCTCCCACCACTCTCACCATGTGCCCATCGTGTGAGCGCGTGGCCGTCGCGTCCGCCTCATCCTCAGCACCCTCTCCATCACCCGCCTCCAACCCACTTGCTGCAGCCCCTCATTTCCCATTGGGCCCGCATCAACATCGGCCCATGCCCATAGCCGGGCCATGGGCCGGAGCAGCATCAATGCGCCACAGACCGTTCGATGCCCATGGCACCAGGTCGTGA 879 55.52 MEENEFWMVDKDDDLGLSLALKCPEALPQRPLNLFVQKKALCSDAFHASETRAYLRGIDVNRAPTMADCEDVGVSSPNSTISSISGKRNDRETNEEENENENEIESSEEDAGGTGDTVRKKLRLSKEQSAILEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRTLKLSPQLYMHMNPPTTLTMCPSCERVAVASASSSAPSPSPASNPLAAAPHFPLGPHQHRPMPIAGPWAGAASMRHRPFDAHGTRS* 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12566180 12593884 - Vvi15g340 Vvi15g340 777032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g340 292 SUPERFAMILY Homeodomain-like 110 176 IPR009057 -
Vvi15g340 292 SMART HOX_1 117 179 IPR001356 GO:0003677
Vvi15g340 292 ProSitePatterns 'Homeobox' domain signature. 150 173 IPR017970 GO:0000981|GO:0006355
Vvi15g340 292 PANTHER - 13 277 - -
Vvi15g340 292 MobiDBLite consensus disorder prediction 96 110 - -
Vvi15g340 292 Pfam HD-ZIP protein N terminus 8 92 IPR006712 GO:0005634
Vvi15g340 292 MobiDBLite consensus disorder prediction 72 87 - -
Vvi15g340 292 Gene3D - 123 173 - -
Vvi15g340 292 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677
Vvi15g340 292 SMART halz 175 218 IPR003106 GO:0006355|GO:0043565
Vvi15g340 292 MobiDBLite consensus disorder prediction 68 118 - -
Vvi15g340 292 Pfam Homeobox associated leucine zipper 175 208 IPR003106 GO:0006355|GO:0043565
Vvi15g340 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 13 277 - -
Vvi15g340 292 Pfam Homeodomain 119 173 IPR001356 GO:0003677
Vvi15g340 292 Coils Coil 181 211 - -
Vvi15g340 292 MobiDBLite consensus disorder prediction 238 292 - -
Vvi15g340 292 CDD homeodomain 119 176 IPR001356 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14051 PF04618 HD-ZIP_N 3.00E-17 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g340 K09338 - vvi:100264963 507.294