Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g349 ATGTTCGGGCGTCCCCCAAGGAGGAGTGATAGCACCAAGTACTATGATATTCTTGGAGTTTCAAAAAATGCCAATCAAGATGAACTGAAGAAGGCATATAAAAAGGCTGCCATAAAGAACCACCCAGACAAGGGTGGAGACCCGGAGAAGTTCAAGGAGTTGTCTCAAGCTTATGATGTTCTTAGCGATCCAGATAAAAGAGAAATCTATGACCAATATGGTGAAGATGGGCTTAAAGAGGGAATGGGAGGAGGTGGTGGCTTTCATAATCCAGTTGATATATTTGAATCATTTTTTGGTGGAGGAGCTTTTGGTGGTGGTGGTAGCTCAAGAGGAAGAAGGCAGAAACGAGGTGAAGATGTTGTGCATACTTTGAAGGTTTCTTTGGAGGACTTGTATAATGGCACATCAAAGAAATTATCTCTATCAAGGAATGTTATGTGCCCAAAATGTAAAGGAAAAGGTTCAAAGAGTGGGGCATCTGGGAGATGTTATGGCTGCCAAGGTTCAGGAATGAAGATTACAACCCGACAGATTGCACCAGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGGTGAGGTTATTAGTGAGAGAGATAGGTGCCCCCAGTGCAAAGGAAACAAGGTTAGTACGGAAAAGAAGGTACTGGAGGTGCATGTTGAGAAGGGAATGCAGCATGGTGAGAGGATTGTGTTTCAAGGAGAAGCCGATCAAGCGCCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCATGCCAAGTTCAAGCGGAAATATGACGATCTCTACGTAGAGCATACCCTCAGTTTAACGGAGGCCCTCTGTGGGTTTCAGTTTGCTTTGACTCATCTTGATGGCAGGCAGCTTCTGATTAAATCAAACCCTGGCGAGATCATCAAACCAGATCAATACAAAGCAATCAATGATGAGGGAATGCCGCACCACCAAAGACCCTTCATGAAGGGTAAGCTTTACATCCATTTTGATGTGGAGTTCCCAGAGTCTGGAATTCTATCCCCTGATCAATGCAAGGCTTTGGAGTCGATCCTACCTCAAAAGCGGAGCAAGCAAATATCAGCAATGGAGGTAGACGAGGCTGAGGAGACAACATTGTATGATGTGAACATCGAGGAAGAGATGAGGCGGAAGCAGCAGCAACAGCAACACGAGGCGTATGATGAGGACGATGATGATTTTGGGGCACCTCGGGTGCATGGAAATTCTTCCCTTCTAAACTATTCACGGAATTTCAAACTAGGGCAACTTGGATACTGGTGTGCATTTATTTGTATACCAAGAAATTCTTTCAGGGTACTTCAACTAAAGGAGAGAGGATATCTTCATTGCATTAATGTCAGTGCCCCTTTCCTAACCTGCATTTTCCAGGAAGGATCTCTACAAGTAGGGACAAGGGTTCCCCAATTATTTTGGACCCATGTAAGGTTATATAGGGAAATGTTTTGGGATTCCATGGTAAAAAAAATAAAAAACAAAATTAAAATCATGTCATTTTATTTTTCATGGCATGATGACATGCCGAGACAAGGTGGGAGAAAAGTACAAGGAATGAAAAATGGGAATGAGAGTAGGAAGAGGCAGAAGACGGAGAATGATGGGAAGCAGCATCCGACGTATCGAGGAGTGCGAATGCGAAATTGGGGCAAATGGGTGTCGGAGATCCGGGAGCCCAAGAAGAAGTCTAGGATTTGGCTAGGGACGTATCCTACGGCGGAAATGGCAGCTCGGGCACACGATGTGGCGGCGCTCGCCATCAAGGGTAGCTCTCCCCACCTCAATTTCCCTGAATTGGCGCACGCGCTTCCCCGCCCCGCCTCTACCTCCCCTAAGGACATCCAAGCCGCGGCGGCGGAGGCGGCCAACACCACATTCTCGCAGCCTGATGAGACGGAAGGTTTTGTTATTAGGGTTTTAATGCTATTGACTCCGATGTTAGTTGTTACCCACATTTCTATTTTGGGCTACCCGTTTGGTGAAACTTTAATGCAATTGACTCTTAACTTAATGCTTTCCCATTTCCTATATATCTAG 2079 45.41 MFGRPPRRSDSTKYYDILGVSKNANQDELKKAYKKAAIKNHPDKGGDPEKFKELSQAYDVLSDPDKREIYDQYGEDGLKEGMGGGGGFHNPVDIFESFFGGGAFGGGGSSRGRRQKRGEDVVHTLKVSLEDLYNGTSKKLSLSRNVMCPKCKGKGSKSGASGRCYGCQGSGMKITTRQIAPGMIQQMQHVCHECRGSGEVISERDRCPQCKGNKVSTEKKVLEVHVEKGMQHGERIVFQGEADQAPDTITGDIVFVLQLKDHAKFKRKYDDLYVEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPDQYKAINDEGMPHHQRPFMKGKLYIHFDVEFPESGILSPDQCKALESILPQKRSKQISAMEVDEAEETTLYDVNIEEEMRRKQQQQQHEAYDEDDDDFGAPRVHGNSSLLNYSRNFKLGQLGYWCAFICIPRNSFRVLQLKERGYLHCINVSAPFLTCIFQEGSLQVGTRVPQLFWTHVRLYREMFWDSMVKKIKNKIKIMSFYFSWHDDMPRQGGRKVQGMKNGNESRKRQKTENDGKQHPTYRGVRMRNWGKWVSEIREPKKKSRIWLGTYPTAEMAARAHDVAALAIKGSSPHLNFPELAHALPRPASTSPKDIQAAAAEAANTTFSQPDETEGFVIRVLMLLTPMLVVTHISILGYPFGETLMQLTLNLMLSHFLYI* 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12895593 12935971 + Vvi15g349 Vvi15g349 777041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g349 692 SMART dnaj_3 12 66 IPR001623 -
Vvi15g349 692 CDD DnaJ 14 63 IPR001623 -
Vvi15g349 692 MobiDBLite consensus disorder prediction 534 555 - -
Vvi15g349 692 Gene3D DnaJ domain 10 109 IPR036869 -
Vvi15g349 692 CDD DnaJ_C 119 345 - -
Vvi15g349 692 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Vvi15g349 692 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Vvi15g349 692 Hamap Chaperone protein DnaJ [dnaJ]. 10 389 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vvi15g349 692 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vvi15g349 692 Gene3D - 148 214 - -
Vvi15g349 692 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 345 IPR008971 GO:0006457|GO:0051082
Vvi15g349 692 PANTHER DNAJ PROTEIN HOMOLOG 2-LIKE ISOFORM X1 7 416 - -
Vvi15g349 692 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Vvi15g349 692 Pfam AP2 domain 554 603 IPR001471 GO:0003700|GO:0006355
Vvi15g349 692 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 216 IPR036410 -
Vvi15g349 692 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Vvi15g349 692 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Vvi15g349 692 CDD AP2 555 613 IPR001471 GO:0003700|GO:0006355
Vvi15g349 692 Gene3D - 262 344 - -
Vvi15g349 692 PRINTS Ethylene responsive element binding protein signature 555 566 IPR001471 GO:0003700|GO:0006355
Vvi15g349 692 PRINTS Ethylene responsive element binding protein signature 577 593 IPR001471 GO:0003700|GO:0006355
Vvi15g349 692 MobiDBLite consensus disorder prediction 390 409 - -
Vvi15g349 692 MobiDBLite consensus disorder prediction 526 555 - -
Vvi15g349 692 Pfam DnaJ domain 13 71 IPR001623 -
Vvi15g349 692 Gene3D - 110 260 - -
Vvi15g349 692 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 7 416 IPR044713 GO:0006457|GO:0030544
Vvi15g349 692 SUPERFAMILY DNA-binding domain 554 612 IPR016177 GO:0003677
Vvi15g349 692 ProSiteProfiles AP2/ERF domain profile. 554 611 IPR001471 GO:0003700|GO:0006355
Vvi15g349 692 SMART rav1_2 554 617 IPR001471 GO:0003700|GO:0006355
Vvi15g349 692 PRINTS DnaJ domain signature 15 33 IPR001623 -
Vvi15g349 692 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vvi15g349 692 PRINTS DnaJ domain signature 66 85 IPR001623 -
Vvi15g349 692 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Vvi15g349 692 Gene3D AP2/ERF domain 554 612 IPR036955 GO:0003700|GO:0006355
Vvi15g349 692 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 262 IPR008971 GO:0006457|GO:0051082
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14053 PF01556 DnaJ_C 2.40E-40 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g349 K09503 - vvi:100242705 782.711