Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g374 ATGCATTGTATCAAGGTCTCTTCTTTACTAAGATTAGGCTCTGAATTACTTAATCTCACCGAGGAATTATTCAGCCCTACATCTCTCCGATCATATTTTGCCGAGTTTATCTCTACATTCATCTTCGTTTTCCTCGGAGTCGGCTCTGCAATGTCAGCCGATGCCACCTCAGCTGAAACCGGTGTTCTGGCTGTTGCCGTGGCACACGCTTTTGCATTGGTTGTTGCTATGTATTTGGCCGGAGATATATCTGATGGCCATGTCAATCCAGCTGTCACATATGGATTGGTTGTTGGAGGCCATGTCAGCGGGTTGACTGGCATATGTTATTGCATGGCTCAATTATCGGGGTCCGTTACTGCATGCGTGGCGTTAATATTGGCGATTCCTACTACAAGGCCGGATCCCAAAATATCGGGTTTAGCTGACGTGGCGATCGAGGCCTTGGCCACGTTTGCAATCGTGTATGCGGTGTATGTAGCACGAGACCTAAGGAACGGGTCACGTGGAATCATGGGACCAATAGCGGTCGGGTTTATATACGGGGCGAATATATTGGTGACAGCACCGTTAACGGGCGGGTCAATGAATCCAGCCCGATCATTTGGACCGGCATTTGTAACGGGTGATATGAAGAAGCAGTGGGTTTACTGGGTCGGACCCCTGGTTGGAGGGGGCATTGCAGGTTTGGTGTATGAGAGCTTGATGACAACATCAAATGGCCAGCCTCCTTCTTCTATTAGTAGTGTGGGCTAG 756 49.07 MHCIKVSSLLRLGSELLNLTEELFSPTSLRSYFAEFISTFIFVFLGVGSAMSADATSAETGVLAVAVAHAFALVVAMYLAGDISDGHVNPAVTYGLVVGGHVSGLTGICYCMAQLSGSVTACVALILAIPTTRPDPKISGLADVAIEALATFAIVYAVYVARDLRNGSRGIMGPIAVGFIYGANILVTAPLTGGSMNPARSFGPAFVTGDMKKQWVYWVGPLVGGGIAGLVYESLMTTSNGQPPSSISSVG* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13417085 13418212 - Vvi15g374 Vvi15g374 777066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g374 251 PRINTS Major intrinsic protein family signature 30 49 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g374 251 PRINTS Major intrinsic protein family signature 69 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g374 251 PRINTS Major intrinsic protein family signature 106 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g374 251 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g374 251 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g374 251 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g374 251 CDD MIP 30 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g374 251 SUPERFAMILY Aquaporin-like 22 239 IPR023271 -
Vvi15g374 251 Pfam Major intrinsic protein 25 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g374 251 PANTHER - 4 251 - -
Vvi15g374 251 Gene3D Glycerol uptake facilitator protein. 14 246 IPR023271 -
Vvi15g374 251 PANTHER AQUAPORIN-8 4 251 IPR034294 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g374 K09873 - vvi:100247890 464.536