Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g383 ATGGACTTGTACGGTCTACAGACGTCCGACTTTTTTCGTATCGATGACCTACTTGACTTTACTAATGACGAACTCTTCTCCTCCACTACCACTGATTCCGGCAATCTCCCTCCGCCGGAGATAGCCTCCGGCAACCGCTCTTTGGCGGCCTCCGGCAACCGCGACCAGCCTAATACTTTTCATTCTGCTGATTTCACTGACGACCTCTGTGTTCCTAGTGATGATGTTGCTGAGCTCGAGTGGCTTTCGAACTTCGTGGACGACTCATTTGCGGATTTTCCGGAGAATGAACTCGCCGGAACCGTAATGGCCCGGCCTGACTCATCATTTCCAGGGCGGACACGTAGTAAGCGGTCCAGAGCATCGTCGACGAACAAAGTATGGACTTCCTCATCGTCATCATCTGTGATTAGCGGAGAGAGATCCTCGTCCTCGTCGCCGGCATCGTCGCCCACGGGAGCGCGTAAGTGCACGCACTGCGCTTCGGAGAAAACGCCACAGTGGCGCACGGGTCCTCTAGGTCCAAAAACACTATGCAACGCGTGCGGCGTGCGTTACAAGTCAGGCCGACTGGTTCCGGAGTACCGACCTGCAGCGAGTCCAACGTTTGTGCTGACTCAGCACTCGAACTCGCACCGCAAGGTGATGGAGCTCCGTCGCCAGAAGGAAATCCTCCGGCAACAGCAACAACAACAACAGCTCTACCATCACCACCACGACTTCGAGGAAGTTTCATTAAATTTTCTTTTCTTTGCTTTGATGCTTTAA 768 53.65 MDLYGLQTSDFFRIDDLLDFTNDELFSSTTTDSGNLPPPEIASGNRSLAASGNRDQPNTFHSADFTDDLCVPSDDVAELEWLSNFVDDSFADFPENELAGTVMARPDSSFPGRTRSKRSRASSTNKVWTSSSSSSVISGERSSSSSPASSPTGARKCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKEILRQQQQQQQLYHHHHDFEEVSLNFLFFALML* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13505484 13506854 + Vvi15g383 Vvi15g383 777075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g383 255 SMART GATA_3 151 201 IPR000679 GO:0006355|GO:0043565
Vvi15g383 255 ProSitePatterns GATA-type zinc finger domain. 157 182 IPR000679 GO:0006355|GO:0043565
Vvi15g383 255 PIRSF Txn_fac_GATA_plant 2 248 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vvi15g383 255 MobiDBLite consensus disorder prediction 102 166 - -
Vvi15g383 255 PANTHER GATA TRANSCRIPTION FACTOR 1 232 - -
Vvi15g383 255 Gene3D - 153 237 IPR013088 GO:0006355|GO:0008270
Vvi15g383 255 ProSiteProfiles GATA-type zinc finger domain profile. 151 187 IPR000679 GO:0006355|GO:0043565
Vvi15g383 255 PANTHER GATA TRANSCRIPTION FACTOR 1 232 - -
Vvi15g383 255 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 215 - -
Vvi15g383 255 MobiDBLite consensus disorder prediction 115 156 - -
Vvi15g383 255 MobiDBLite consensus disorder prediction 28 65 - -
Vvi15g383 255 CDD ZnF_GATA 156 203 IPR000679 GO:0006355|GO:0043565
Vvi15g383 255 Pfam GATA zinc finger 157 190 IPR000679 GO:0006355|GO:0043565
Vvi15g383 255 MobiDBLite consensus disorder prediction 28 63 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g383 - - - vvi:100244467 422.55
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g383 Blo01g00314 . Bda03g01053 Bda08g00019 . Bpe05g01125 Bma04g00965 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0515 Cone15ag0541 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g279 ECH 61 163 C2C2-Gata Transcription Factor Family AT5G25830 73.1 5.6e-39 158.7
Vvi15g383 . 1 226 C2C2-Gata Transcription Factor Family AT2G45050 56.0 5.5e-61 231.5
Vvi15g383 . 1 223 C2C2-Gata Transcription Factor Family AT3G60530 60.4 2.5e-68 255.8
Vvi9g303 ECH 45 284 C2C2-Gata Transcription Factor Family AT4G32890 50.8 5.4e-60 228.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018084 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14057 PF00320 GATA 1.70E-15 CL0167 Vvi TF