Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g383 ATGGACTTGTACGGTCTACAGACGTCCGACTTTTTTCGTATCGATGACCTACTTGACTTTACTAATGACGAACTCTTCTCCTCCACTACCACTGATTCCGGCAATCTCCCTCCGCCGGAGATAGCCTCCGGCAACCGCTCTTTGGCGGCCTCCGGCAACCGCGACCAGCCTAATACTTTTCATTCTGCTGATTTCACTGACGACCTCTGTGTTCCTAGTGATGATGTTGCTGAGCTCGAGTGGCTTTCGAACTTCGTGGACGACTCATTTGCGGATTTTCCGGAGAATGAACTCGCCGGAACCGTAATGGCCCGGCCTGACTCATCATTTCCAGGGCGGACACGTAGTAAGCGGTCCAGAGCATCGTCGACGAACAAAGTATGGACTTCCTCATCGTCATCATCTGTGATTAGCGGAGAGAGATCCTCGTCCTCGTCGCCGGCATCGTCGCCCACGGGAGCGCGTAAGTGCACGCACTGCGCTTCGGAGAAAACGCCACAGTGGCGCACGGGTCCTCTAGGTCCAAAAACACTATGCAACGCGTGCGGCGTGCGTTACAAGTCAGGCCGACTGGTTCCGGAGTACCGACCTGCAGCGAGTCCAACGTTTGTGCTGACTCAGCACTCGAACTCGCACCGCAAGGTGATGGAGCTCCGTCGCCAGAAGGAAATCCTCCGGCAACAGCAACAACAACAACAGCTCTACCATCACCACCACGACTTCGAGGAAGTTTCATTAAATTTTCTTTTCTTTGCTTTGATGCTTTAA 768 53.65 MDLYGLQTSDFFRIDDLLDFTNDELFSSTTTDSGNLPPPEIASGNRSLAASGNRDQPNTFHSADFTDDLCVPSDDVAELEWLSNFVDDSFADFPENELAGTVMARPDSSFPGRTRSKRSRASSTNKVWTSSSSSSVISGERSSSSSPASSPTGARKCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKEILRQQQQQQQLYHHHHDFEEVSLNFLFFALML* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13505484 13506854 + Vvi15g383 Vvi15g383 777075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g383 255 SMART GATA_3 151 201 IPR000679 GO:0006355|GO:0043565
Vvi15g383 255 ProSitePatterns GATA-type zinc finger domain. 157 182 IPR000679 GO:0006355|GO:0043565
Vvi15g383 255 PIRSF Txn_fac_GATA_plant 2 248 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vvi15g383 255 MobiDBLite consensus disorder prediction 102 166 - -
Vvi15g383 255 PANTHER GATA TRANSCRIPTION FACTOR 1 232 - -
Vvi15g383 255 Gene3D - 153 237 IPR013088 GO:0006355|GO:0008270
Vvi15g383 255 ProSiteProfiles GATA-type zinc finger domain profile. 151 187 IPR000679 GO:0006355|GO:0043565
Vvi15g383 255 PANTHER GATA TRANSCRIPTION FACTOR 1 232 - -
Vvi15g383 255 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 215 - -
Vvi15g383 255 MobiDBLite consensus disorder prediction 115 156 - -
Vvi15g383 255 MobiDBLite consensus disorder prediction 28 65 - -
Vvi15g383 255 CDD ZnF_GATA 156 203 IPR000679 GO:0006355|GO:0043565
Vvi15g383 255 Pfam GATA zinc finger 157 190 IPR000679 GO:0006355|GO:0043565
Vvi15g383 255 MobiDBLite consensus disorder prediction 28 63 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14057 PF00320 GATA 1.70E-15 CL0167 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g383 - - vvi:100244467 422.55