Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g391 ATGATTTTAAAGAGAAGGGCAGGTGATGAAGAGGACAAGAAGAGAGGAACAGGAAAATCCTCGGTCTCCAGCAAAAGGAGTAGGGCAGCTGCCATCCATAATCAATCTGAACGTAAAAGAAGAGATAAGATCAATCAAAGAATGAAGACATTACAAAAACTGGTTCCCAACTCGAGTAAGACAGATAAAGCTTCAATGCTTGATGAAGTGATTGAATACCTGAAACAATTGCAAGCCCAAGTTCAGATGATGAATAGAATGAACATGTCACCCATGATGATGCCGATGACCCTGCAGCAGCAACTTCAAATGTCACTGATGGCTCAGATGGGCATGGGAATGGGGATGAGCCCAATGGGAATGGGCGTTGTGGATATGAACACCATCGCTCGACCCAACGTCGCCACCACCGGCATCTCTCCTCTCCTCCACCCCACTCCTTTCCTCCCTTTAACTTCATGGGATGTCTCCGGTGACCGCTTACCTGCTGCGCCAACAATGGTGCCTGACCCTTTGGCCGCATTCCTTGCTTGCCAATCCCAACCAATGACGATGGATGCTTATAGTAGGATGGCAGCCTTGTACCAACACCTGCATCAGCATCCAGCCTCTAGCGCCAGGAGCCAAGGGCTATGA 636 48.74 MILKRRAGDEEDKKRGTGKSSVSSKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRMNMSPMMMPMTLQQQLQMSLMAQMGMGMGMSPMGMGVVDMNTIARPNVATTGISPLLHPTPFLPLTSWDVSGDRLPAAPTMVPDPLAAFLACQSQPMTMDAYSRMAALYQHLHQHPASSARSQGL* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13708126 13710873 - Vvi15g391 Vvi15g391 777083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g391 211 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 5 206 IPR031066 -
Vvi15g391 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 96 IPR036638 GO:0046983
Vvi15g391 211 CDD bHLH_AtPIF_like 29 82 - -
Vvi15g391 211 SMART finulus 34 83 IPR011598 GO:0046983
Vvi15g391 211 Gene3D - 23 89 IPR036638 GO:0046983
Vvi15g391 211 MobiDBLite consensus disorder prediction 1 45 - -
Vvi15g391 211 Coils Coil 67 87 - -
Vvi15g391 211 MobiDBLite consensus disorder prediction 1 19 - -
Vvi15g391 211 PANTHER TRANSCRIPTION FACTOR UNE10 5 206 - -
Vvi15g391 211 MobiDBLite consensus disorder prediction 31 45 - -
Vvi15g391 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 77 IPR011598 GO:0046983
Vvi15g391 211 Pfam Helix-loop-helix DNA-binding domain 33 78 IPR011598 GO:0046983
Vvi15g391 211 Coils Coil 34 54 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14058 PF00010 HLH 2.20E-14 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g391 - - vvi:100244381 308.531