Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g419 ATGAAGGGAAAAAGAGCTGTTTCAGAGTTGGTGTGTGGGTGTTGGACAAGATTGAGTGGTTTTTCCTTTTTTCTTAGGAAGAAGGAGGTTGTTGTGTGGGCACTGAGCCTACCTCTGTCCTGGATACTAGAAGAAGCCCAAGTCCTCCTACATCCACCTCAACACTGTCTTCTTCTTCCGGACACCACAAGCTCCAATGCTGGAGTTGAACTCCACCCAATTCCCGCCTCTGTAGATCTCGGGGCCGGTGAAAAATGCGGTCTTGGAATGGAGGATTGGGAGAGTGTGTTGTCGGAGACGGCAGCCTCGCCCAGCCAAGAGCAGTCCATTCTCCGGTGGATCATGGGTGATGTCGAGGACCCATCAGTGGGCTTGAATAAACTGCTTCAATCTGGTGGAGGTGGCCCTCCTGATTTCGAATTCAGCAGTGGCTTTGGGGTTGTGGATCAGGGTTTTGGGTTTGAGCCATCTTTGGATGAGAAGCCACAGATTTTAATTCCCCAGGTGCTTATAAACCAGCACCAGGCTCAACATACTCAAAACCCCGCTTTTTTCTTGCCATTGCCCTATGCCCAGCAAGAGCAGAACCTCCTCTTGCCGCCCCAGGCCAAGCGGCACAACACTGGGCCTATAGGGAGCATTGAACAGAATTGTCCGGCCGCAGAGCTGGTCGAGACGGGGAATACAATACTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCTCCAATTGGCAAGCCTTTTCAAAGAGCTGCTTTCTACTTCAAGGAGGCCCTGCAATTACTCCTCCATTCCAACAGCAATAACACCAACCCGTTGGCCACCTCGCCTCATTCTTCACCATTTAGCCTTATCTTCAAGATTGGAGCTTACAAATCCTTCTCAGAGATATCACCGCTCATTCAATTTGCCAATTTCACCTGCATTCAAGCCATCCTTGAAGCCTTGGAGGGCTTTGATCGAATCCACATAATCGATTTTGATATTGGATATGGTGGGCAATGGGCTTCGCTTATGCAGGAGCTTGCCTTGAGGAACGGTGGTGCCCCTTCTCTGAAAATCACTGCGTTTGCTTCTCTCTCCAACCATGATCAGCTTGAGCTTGGCCTCGCCAGAGAAAATCTAAACCACTTTGCTGGTGAAATTAACATGGCTTTTGAACTTGAAATTCTAAGCCTTGATTCTTTGAATTCATTACCCCTTCATCTCTCAGAGAATGAAGCAGTTGCTGTGAACCTCCCAGTTGGTTCTTTCTCGAATTACCCCTTACCCCTTCCTTTGGTACTTCGTGTTGTGAAGCAGCTCTCCCCAAAAATTATGGTTTCATTGGACCGAGGCTGTGACCGAACTGATCTTCCATACTCTCACCATATCCTTCACGCCTTTCAGTCTTACTTGGCCCTTCTCGAGTCCCTTGATGCTGTAAATGTGAACTCAGATGCCCTGCAAAAGATTGAAAGGTTCTTGCTTCAACCTGGCATTGAGAAAATCGTCCTGGGTCGCCACCGCTCCCCTGAGAAGACCCCACCTTGGAGGGCTCTTCTATTATCATCTGGGTTCTCCCCATTAACGTTCAGTAATTTCTCAGAGTCCCAAGCTGAGTGTTTGGTGAAGCGGACGCCTGTTCGGGGTTTCCACGTTGAGAAGAGACAATCTTCGCTTGTTCTCTGCTGGCAAAGAAAAGATCTCATCTCAGCTTCAGCTTGGAGGTGCTGA 1722 49.19 MKGKRAVSELVCGCWTRLSGFSFFLRKKEVVVWALSLPLSWILEEAQVLLHPPQHCLLLPDTTSSNAGVELHPIPASVDLGAGEKCGLGMEDWESVLSETAASPSQEQSILRWIMGDVEDPSVGLNKLLQSGGGGPPDFEFSSGFGVVDQGFGFEPSLDEKPQILIPQVLINQHQAQHTQNPAFFLPLPYAQQEQNLLLPPQAKRHNTGPIGSIEQNCPAAELVETGNTILAQGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHSNSNNTNPLATSPHSSPFSLIFKIGAYKSFSEISPLIQFANFTCIQAILEALEGFDRIHIIDFDIGYGGQWASLMQELALRNGGAPSLKITAFASLSNHDQLELGLARENLNHFAGEINMAFELEILSLDSLNSLPLHLSENEAVAVNLPVGSFSNYPLPLPLVLRVVKQLSPKIMVSLDRGCDRTDLPYSHHILHAFQSYLALLESLDAVNVNSDALQKIERFLLQPGIEKIVLGRHRSPEKTPPWRALLLSSGFSPLTFSNFSESQAECLVKRTPVRGFHVEKRQSSLVLCWQRKDLISASAWRC* 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 14396698 14399661 - Vvi15g419 Vvi15g419 777111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g419 573 Pfam GRAS domain family 219 572 IPR005202 -
Vvi15g419 573 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 84 572 IPR005202 -
Vvi15g419 573 PANTHER SCARECROW-LIKE PROTEIN 6 84 572 - -
Vvi15g419 573 ProSiteProfiles GRAS family profile. 204 572 IPR005202 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14061 PF03514 GRAS 2.00E-94 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g419 - - vvi:100267664 695.271