Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g438 ATGGCTTATTGGGTCACTACCTTTCTTCTTCTCTTATCCTTCACCATCAGTGTTGCCTGCAATGAAGAGCTCAAAGCGGTTCGGACGGCTCGGTTCGGACTCTTGCAAGGTGGGAGATGGGCTCGGGGTTCATTGAGGCTTCACGGGTTAAATCTTGTTGATTCGGGTTATGTGGGTGAGGCTCTGGGTGACTGTGTTAAGCTTTATGAAGAGTCCGAGAGCCGACTGACCAGGTTGCTCTCGGGTGAGACCCGAAACTGTGATGATGCACGTACGTGGCTCAGCAGCGCGCTGGCTAGCCATAGGACCTGTTTGGATGGCTTGGAGGGTAAGGGGATGGCTGAGGCTCCTATGGCTCGGAATGTCACCGTGTGGCTAAGTGAAGCTTTGGCTTTGTATGCGAAGTATAAGGAGCCGGATACGGATGCGGAGAAGGAAGTGCAACCGACATTGAAACCGAGCCAAAATGAAGTGATGCTAGCTGAATGGAGTCCAAAAACATCCAAGGCAGACATCGTGGTGGCCAAGGACGGATCCGGAAATCACATGACAATTAATGAAGCTGTTGCTGCACTAACCCGCATGGTCCATAAGAGGACTCGAAGAGTGGTTGTCTACGTGAAGTCCGGGATCTACAATGAGAAGGTGGAGATTGGAAAAAACTTGAACAATGTGATGTTTGTTGGTGATGGTGTTGATAAAACCATTATCACCGCTGATCGAAATGTCCACGATGGTGCAACCACTCCAAGCTCCGCCACGTTTGGTGTGTCTGGAGATGGCTTTTGGGCAAAAGACATAACATTTGAGAACAGAGCAGGGCCTCACAAACATCAGGCAGTGGCAATGAGGGTGAGCTCGGACCTCTCGGTGTTCTACCGTTGTAGTTTTAAAGGTTACCAAGACACATTATACGTCCATTCTAATAGACAATTCTTTCGCGACTGCCATGTATATGGCACTATCGATTTCATATTCGGTAATGCCGCAGTTGTCTTCCAAAACTGTGATATCTACGTGAGAAAACCAATGAACCGCCAATCCAACATGATCACCGCACAGGGAAGAGACATCCCCGAAGAGCCTACTGGAATTTCAGTACAAGCTTCGAGAGTTCTTTCATCTCCTGAATTCACTACTGTTAAAGGCTCTTTCAAGAGTTTCTTGGGTCGACCTTGGAAGCGATATTCTAGAACTGTTTTCCTAGAGACAGACTTGGATGGTTTGATTGATCCAAGAGGATGGACAGAGTGGAGTGGAAACTATGGGCTGTCGACATTATACTATGGGGAGTATAATAATTCAGGTGGTGGAGCATCGACAAAGGAAAGAGTGAAGTGGCCTGGTTTTCATGTGCTAAATGGTACTGAAGATGCTATGCCTTTCACAGTAAGTAGATTCATACAAGGAGAGAAATGGATTCCTGCTAGTGGTGTTCCCTTCTCTCCTGGAATTTAA 1458 47.39 MAYWVTTFLLLLSFTISVACNEELKAVRTARFGLLQGGRWARGSLRLHGLNLVDSGYVGEALGDCVKLYEESESRLTRLLSGETRNCDDARTWLSSALASHRTCLDGLEGKGMAEAPMARNVTVWLSEALALYAKYKEPDTDAEKEVQPTLKPSQNEVMLAEWSPKTSKADIVVAKDGSGNHMTINEAVAALTRMVHKRTRRVVVYVKSGIYNEKVEIGKNLNNVMFVGDGVDKTIITADRNVHDGATTPSSATFGVSGDGFWAKDITFENRAGPHKHQAVAMRVSSDLSVFYRCSFKGYQDTLYVHSNRQFFRDCHVYGTIDFIFGNAAVVFQNCDIYVRKPMNRQSNMITAQGRDIPEEPTGISVQASRVLSSPEFTTVKGSFKSFLGRPWKRYSRTVFLETDLDGLIDPRGWTEWSGNYGLSTLYYGEYNNSGGGASTKERVKWPGFHVLNGTEDAMPFTVSRFIQGEKWIPASGVPFSPGI* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 14614855 14617208 - Vvi15g438 Vvi15g438 777130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g438 485 Gene3D - 165 485 IPR012334 -
Vvi15g438 485 CDD PMEI-like_4 5 135 - -
Vvi15g438 485 Pfam Plant invertase/pectin methylesterase inhibitor 56 131 IPR006501 GO:0004857
Vvi15g438 485 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 5 483 - -
Vvi15g438 485 ProSitePatterns Pectinesterase signature 2. 318 327 IPR033131 -
Vvi15g438 485 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 121 IPR006501 GO:0004857
Vvi15g438 485 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 135 IPR035513 -
Vvi15g438 485 Pfam Pectinesterase 171 471 IPR000070 GO:0030599|GO:0042545
Vvi15g438 485 PANTHER PECTINESTERASE 5 483 - -
Vvi15g438 485 SUPERFAMILY Pectin lyase-like 167 484 IPR011050 -
Vvi15g438 485 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 131 IPR035513 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g438 K01051 - vvi:100252362 987.252