Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g443 ATGTCCTCCTCATCTGCCTTTTCACCGGACCACCTCTCCCCCACCTCCGACCAGCTCTGTTACGTCCATTGCAACTTTTGTGACACTGTCCTCGCGGTGAGCGTTCCTTGCACTAGTTTGTTCAAGACTGTTACGGTTCGATGCGGTCACTGCACCAACCTCTTGTCCGTCAACATGCGTGGACTGCTTCTTCCTGCTGCTAATCAGCTTCACCTGGGACACTCTCTCTTCTCTCCTCATAATATTCTGGAGGAGATCCGCAGCCCACCGTCCAGTATGTTAATCAATCAGCCCAACCCGAATGAGGCGGTCATGCCGGTGCGAGGAGTCGATGAGATACCGAAACCCCCAGTAGTTAACAGACCCCCGGAGAAGAGACAGAGAGTCCCATCTGCTTACAACCGATTCATCAAGGACGAGATCCAACGTATCAAAGCTGGAAATCCAGGCATAAGTCACAGAGAGGCCTTTAGTGCTGCTGCAAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGATCAACCCGTGAAGAAAGCTAACGTGCGCCAACAGGAAGGAGAGGACATGCTCATGAAAGATGGTTTCTTTGCTCCTGCCAATGTGGGTGTCTCCCCCTACTAA 633 51.82 MSSSSAFSPDHLSPTSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHSLFSPHNILEEIRSPPSSMLINQPNPNEAVMPVRGVDEIPKPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPGISHREAFSAAAKNWAHFPHIHFGLMPDQPVKKANVRQQEGEDMLMKDGFFAPANVGVSPY* 211
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
15 14674817 14677943 + Vvi15g443 Vvi15g443 777135
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g443 210 Pfam YABBY protein 15 174 IPR006780 GO:0007275
Vvi15g443 210 PANTHER PROTEIN YABBY 4 1 208 - -
Vvi15g443 210 Gene3D High mobility group box domain 115 171 IPR036910 -
Vvi15g443 210 PANTHER PROTEIN YABBY 6-RELATED 1 208 IPR006780 GO:0007275
Vvi15g443 210 SUPERFAMILY HMG-box 117 167 IPR036910 -
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14062 PF04690 YABBY 3.70E-72 CL0114 Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g443 K25796 - vvi:100243667 438.343