Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi15g443 | ATGTCCTCCTCATCTGCCTTTTCACCGGACCACCTCTCCCCCACCTCCGACCAGCTCTGTTACGTCCATTGCAACTTTTGTGACACTGTCCTCGCGGTGAGCGTTCCTTGCACTAGTTTGTTCAAGACTGTTACGGTTCGATGCGGTCACTGCACCAACCTCTTGTCCGTCAACATGCGTGGACTGCTTCTTCCTGCTGCTAATCAGCTTCACCTGGGACACTCTCTCTTCTCTCCTCATAATATTCTGGAGGAGATCCGCAGCCCACCGTCCAGTATGTTAATCAATCAGCCCAACCCGAATGAGGCGGTCATGCCGGTGCGAGGAGTCGATGAGATACCGAAACCCCCAGTAGTTAACAGACCCCCGGAGAAGAGACAGAGAGTCCCATCTGCTTACAACCGATTCATCAAGGACGAGATCCAACGTATCAAAGCTGGAAATCCAGGCATAAGTCACAGAGAGGCCTTTAGTGCTGCTGCAAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGATCAACCCGTGAAGAAAGCTAACGTGCGCCAACAGGAAGGAGAGGACATGCTCATGAAAGATGGTTTCTTTGCTCCTGCCAATGTGGGTGTCTCCCCCTACTAA | 633 | 51.82 | MSSSSAFSPDHLSPTSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHSLFSPHNILEEIRSPPSSMLINQPNPNEAVMPVRGVDEIPKPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPGISHREAFSAAAKNWAHFPHIHFGLMPDQPVKKANVRQQEGEDMLMKDGFFAPANVGVSPY* | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 14674817 | 14677943 | + | Vvi15g443 | Vvi15g443 | 777135 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi15g443 | 210 | Pfam | YABBY protein | 15 | 174 | IPR006780 | GO:0007275 | |
Vvi15g443 | 210 | PANTHER | PROTEIN YABBY 4 | 1 | 208 | - | - | |
Vvi15g443 | 210 | Gene3D | High mobility group box domain | 115 | 171 | IPR036910 | - | |
Vvi15g443 | 210 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 208 | IPR006780 | GO:0007275 | |
Vvi15g443 | 210 | SUPERFAMILY | HMG-box | 117 | 167 | IPR036910 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14062 | PF04690 | YABBY | 3.70E-72 | CL0114 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi15g443 | K25796 | - | vvi:100243667 | 438.343 |