Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g462 ATGGATCCAGTTACAGCCCATGGTCGTCCTCTTCCTCCTCCTTTCCACACCAGAGATCTTCAGCTGCACCACCACCACCAATATCAACACCACCCACAAGCCAATTCTGAAGATGAACAAAGTGGCAGCAGCAGCTTAAACCGAGCACAGAAGCGTGATCGCGATGAAAGTAACGCCACCAACAACACTAGTCCGATTGACGGCAAAGAATTCGGCACATCCAGTGGCGATGGAGAGATCACGAGAAGACCTAGAGGCAGACCAGCTGGCTCCAAGAACAAGCCCAAACCTCCCATCATTATAACACGAGACAGTGCCAACGCCCTCCGATCCCATGTCATGGAAATTGCCACCGGATGCGATATCATGGACAGTCTAAACACCTTTGCTCGGCGGCGACAGAGGGGGATTTGCATTTTAAGCGGCAGCGGAACTGTGACCAATGTCACTCTAAGGCAACCCGCTTCCCCCGGTGCAGTTGTGACCTTACACGGAAGATTTGAGATCTTATCGCTCTCCGGCTCTTTTCTACCCCCTCCAGCACCGCCCGCTGCGTCGGGGCTAACCATATACCTGGCCGGCGGACAGGGGCAGGTGGTGGGTGGTAGCGTGGTTGGGCCGCTACTAGCCTCGGGTCCAGTGGTAATCATGGCTGCTTCATTTGGTAATGCCGCATACGAGAGGCTTCCTCTGGAGGATGAAGAGCCGCAGGTTCCGATTCCCGGAAGCGGCCCTCTTGGATCTCCGGGAATGGTGGGACAACAGCCGCAACAGCAGCAGCAGCAGCAACAGCTTTTGCCAGATCCTAACGCATCTCTTTTTCAAGGGTTACCTCCAAATCTTCTCAATTCATGCCAATTACCTGCTGAGGCCTATTGGGGAACTGCTCGCCCACCCTATTAG 903 54.49 MDPVTAHGRPLPPPFHTRDLQLHHHHQYQHHPQANSEDEQSGSSSLNRAQKRDRDESNATNNTSPIDGKEFGTSSGDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIATGCDIMDSLNTFARRRQRGICILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEEPQVPIPGSGPLGSPGMVGQQPQQQQQQQQLLPDPNASLFQGLPPNLLNSCQLPAEAYWGTARPPY* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 14939019 14940681 - Vvi15g462 Vvi15g462 777154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g462 300 PIRSF ESCAROLA 16 300 IPR014476 GO:0003680
Vvi15g462 300 MobiDBLite consensus disorder prediction 234 273 - -
Vvi15g462 300 MobiDBLite consensus disorder prediction 250 273 - -
Vvi15g462 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 106 240 - -
Vvi15g462 300 MobiDBLite consensus disorder prediction 1 101 - -
Vvi15g462 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 110 222 IPR005175 -
Vvi15g462 300 ProSiteProfiles PPC domain profile profile. 106 244 IPR005175 -
Vvi15g462 300 CDD DUF296 110 177 IPR005175 -
Vvi15g462 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 300 IPR014476 GO:0003680
Vvi15g462 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 4 300 - -
Vvi15g462 300 Gene3D - 109 237 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g462 - - vvi:100245513 541.576