Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g466 ATGGATTTTGCTACATTTGTCATCAATTATATAAAGGACAAATGCGATTTCTCCTACTTATTTACAAAGCGTGATGCCACACCTCACTCCAAACTCACCAGCGGCGGAGGCGGTGGTGGTGGGCCTTGTGGGGCTTGCAAGTTTCTAAGGAGAAAGTGTGTGGTGGGATGCATATTTGCACCTTATTTTGATCCGGAGCAAGGAGCAGCCCACTTTGCGGCCGTGCACAAGGTGTTCGGAGCCAGCAATGTTTCCAAGCTGCTTGGCCATATCCCCGTCCACAAACGCCTCGATGCGGTGGTCACTATCTGCTACGAGGCTCAAGCTCGGCTCAGAGACCCTGTCTACGGCTGTGTTGCCCACATATTTGCCCTCCAGCAACAGGTGGTGAATTTACAAGCGGAGCTTTCGTATTTACAAGCCCATCTGGCAACCTTGGAGCTACCATCACCGCCGCCTCCCCCGCCTCCGCCACCTCCGGTGATGGTAACGCCGCCTTCACTCTCAATCTCCGACCTCCCCTCCGCCTCCTCCATGCCCCCAACCTACGATCTCTCCTCACTCTTCGACCCAATGGTGCAACCCTCATCATGGCCCATGCAGCAGCACCGTCAAATAGACCCTCGTCAGTTCGGTGGCTCCAGAGGTCCGACCGACCTCCCCTCGACCGCCGGAGGATCGGGCGGCGGTGACCTTCAGGCGTTGGCACGTGAGCTCCTCCACAGACATAGCTCTGCATTGGGGGGTCACGTGCCGTGCACTGAATCCTCGATGCCTCCATCTATTTCGAAATGA 795 56.1 MDFATFVINYIKDKCDFSYLFTKRDATPHSKLTSGGGGGGGPCGACKFLRRKCVVGCIFAPYFDPEQGAAHFAAVHKVFGASNVSKLLGHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSPPPPPPPPPPVMVTPPSLSISDLPSASSMPPTYDLSSLFDPMVQPSSWPMQQHRQIDPRQFGGSRGPTDLPSTAGGSGGGDLQALARELLHRHSSALGGHVPCTESSMPPSISK* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 14983161 14985661 - Vvi15g466 Vvi15g466 777158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g466 264 MobiDBLite consensus disorder prediction 194 208 - -
Vvi15g466 264 PANTHER LOB DOMAIN CONTAINING PROTEIN 33 245 - -
Vvi15g466 264 MobiDBLite consensus disorder prediction 194 264 - -
Vvi15g466 264 MobiDBLite consensus disorder prediction 149 165 - -
Vvi15g466 264 MobiDBLite consensus disorder prediction 149 181 - -
Vvi15g466 264 ProSiteProfiles LOB domain profile. 41 143 IPR004883 -
Vvi15g466 264 Pfam Lateral organ boundaries (LOB) domain 42 140 IPR004883 -
Vvi15g466 264 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 33 245 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14064 PF03195 LOB 4.40E-38 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g466 K21994 - vvi:100255815 429.483