Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g466 ATGGATTTTGCTACATTTGTCATCAATTATATAAAGGACAAATGCGATTTCTCCTACTTATTTACAAAGCGTGATGCCACACCTCACTCCAAACTCACCAGCGGCGGAGGCGGTGGTGGTGGGCCTTGTGGGGCTTGCAAGTTTCTAAGGAGAAAGTGTGTGGTGGGATGCATATTTGCACCTTATTTTGATCCGGAGCAAGGAGCAGCCCACTTTGCGGCCGTGCACAAGGTGTTCGGAGCCAGCAATGTTTCCAAGCTGCTTGGCCATATCCCCGTCCACAAACGCCTCGATGCGGTGGTCACTATCTGCTACGAGGCTCAAGCTCGGCTCAGAGACCCTGTCTACGGCTGTGTTGCCCACATATTTGCCCTCCAGCAACAGGTGGTGAATTTACAAGCGGAGCTTTCGTATTTACAAGCCCATCTGGCAACCTTGGAGCTACCATCACCGCCGCCTCCCCCGCCTCCGCCACCTCCGGTGATGGTAACGCCGCCTTCACTCTCAATCTCCGACCTCCCCTCCGCCTCCTCCATGCCCCCAACCTACGATCTCTCCTCACTCTTCGACCCAATGGTGCAACCCTCATCATGGCCCATGCAGCAGCACCGTCAAATAGACCCTCGTCAGTTCGGTGGCTCCAGAGGTCCGACCGACCTCCCCTCGACCGCCGGAGGATCGGGCGGCGGTGACCTTCAGGCGTTGGCACGTGAGCTCCTCCACAGACATAGCTCTGCATTGGGGGGTCACGTGCCGTGCACTGAATCCTCGATGCCTCCATCTATTTCGAAATGA 795 56.1 MDFATFVINYIKDKCDFSYLFTKRDATPHSKLTSGGGGGGGPCGACKFLRRKCVVGCIFAPYFDPEQGAAHFAAVHKVFGASNVSKLLGHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSPPPPPPPPPPVMVTPPSLSISDLPSASSMPPTYDLSSLFDPMVQPSSWPMQQHRQIDPRQFGGSRGPTDLPSTAGGSGGGDLQALARELLHRHSSALGGHVPCTESSMPPSISK* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 14983161 14985661 - Vvi15g466 Vvi15g466 777158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g466 264 MobiDBLite consensus disorder prediction 194 208 - -
Vvi15g466 264 PANTHER LOB DOMAIN CONTAINING PROTEIN 33 245 - -
Vvi15g466 264 MobiDBLite consensus disorder prediction 194 264 - -
Vvi15g466 264 MobiDBLite consensus disorder prediction 149 165 - -
Vvi15g466 264 MobiDBLite consensus disorder prediction 149 181 - -
Vvi15g466 264 ProSiteProfiles LOB domain profile. 41 143 IPR004883 -
Vvi15g466 264 Pfam Lateral organ boundaries (LOB) domain 42 140 IPR004883 -
Vvi15g466 264 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 33 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g466 K21994 LBD18; LOB domain-containing protein 18 - vvi:100255815 429.483
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g466 . . . . . . . . . Cmo17g00032 . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag1215 . Csa06g00614 Chy11g01986 Cme06g00253 . . . . . . . . . . . Cma08g00953 Cma17g00029 . Car17g00029 . Cpe12g00025 . . . . . . . Cla06g00032 Cam06g0193 Cec06g0039 Cco06g0037 Clacu06g0037 Cmu06g0036 Cre06g0812 Lsi09g01900 Csa03g00963 Chy06g00237 Cme11g02516
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7g859 . 2 183 AS2 family AT1G65620 53.8 3.7e-46 181.8
Vvi7g861 . 2 110 AS2 family AT1G65620 76.1 7.8e-44 174.1
Vvi16g518 . 2 110 AS2 family AT1G65620 75.2 7.8e-44 174.1
Vvi14g1311 ECH 32 144 AS2 family AT1G65620 69.0 1.2e-41 166.8
Vvi13g77 . 8 114 AS2 family AT1G65620 63.6 1.2e-36 150.2
Vvi7g859 . 1 122 AS2 family AT5G66870 83.6 7.7e-54 208.0
Vvi7g861 . 1 121 AS2 family AT5G66870 79.3 1.4e-50 197.2
Vvi16g518 . 1 116 AS2 family AT5G66870 77.6 3.7e-48 189.1
Vvi13g77 . 8 117 AS2 family AT5G66870 64.5 1.3e-37 154.1
Vvi14g1311 ECH 32 144 AS2 family AT5G66870 63.7 2.9e-37 152.9
Vvi7g861 . 4 118 AS2 family AT2G23660 69.6 4.9e-45 178.7
Vvi16g518 . 4 158 AS2 family AT2G23660 57.1 4.9e-45 178.7
Vvi14g1311 ECH 38 144 AS2 family AT2G23660 60.7 1.1e-36 151.0
Vvi14g1311 ECH 35 164 AS2 family AT3G27650 73.1 2.0e-50 195.7
Vvi7g859 . 4 112 AS2 family AT3G27650 67.0 1.2e-39 159.8
Vvi16g518 . 4 112 AS2 family AT3G27650 65.1 1.0e-38 156.8
Vvi13g77 . 8 114 AS2 family AT3G27650 66.4 3.3e-37 151.8
Vvi7g861 . 4 112 AS2 family AT3G27650 63.3 5.7e-37 151.0
Vvi14g1311 ECH 32 158 AS2 family AT5G63090 79.7 2.5e-52 202.2
Vvi7g859 . 2 110 AS2 family AT5G63090 68.8 6.4e-40 161.0
Vvi16g518 . 2 110 AS2 family AT5G63090 69.7 1.9e-39 159.5
Vvi7g861 . 2 110 AS2 family AT5G63090 67.9 9.2e-39 157.1
Vvi13g101 ECH 4 106 AS2 family AT5G63090 69.9 1.6e-38 156.4
Vvi6g686 ECH 4 106 AS2 family AT5G63090 68.9 1.0e-37 153.7
Vvi19g1042 . 12 131 AS2 family AT5G63090 58.3 1.7e-37 152.9
Vvi13g77 . 9 123 AS2 family AT5G63090 62.6 2.3e-37 152.5
Vvi6g686 ECH 3 164 AS2 family AT2G30130 66.5 3.4e-60 228.4
Vvi13g101 ECH 3 114 AS2 family AT2G30130 92.9 1.9e-55 212.6
Vvi19g1042 . 12 118 AS2 family AT2G30130 76.6 3.4e-44 175.3
Vvi13g460 . 41 150 AS2 family AT2G30130 66.4 3.3e-39 158.7
Vvi6g738 ECH 33 145 AS2 family AT2G30130 68.1 1.6e-38 156.4
Vvi13g134 ECH 31 143 AS2 family AT2G30130 67.3 8.1e-38 154.1
Vvi13g462 ECH 144 267 AS2 family AT2G30130 60.3 1.1e-37 153.7
Vvi19g1042 . 1 169 AS2 family AT1G31320 71.9 1.6e-61 232.6
Vvi6g686 ECH 2 113 AS2 family AT1G31320 73.2 8.0e-45 177.2
Vvi13g101 ECH 2 113 AS2 family AT1G31320 73.2 1.0e-44 176.8
Vvi13g134 ECH 41 154 AS2 family AT1G31320 64.9 1.7e-39 159.5
Vvi13g460 . 41 149 AS2 family AT1G31320 68.8 5.0e-39 157.9
Vvi13g460 . 38 156 AS2 family AT2G28500 79.8 1.3e-50 196.8
Vvi6g318 ECH 36 201 AS2 family AT2G28500 58.2 2.2e-45 179.5
Vvi6g316 ECH 36 203 AS2 family AT2G28500 57.4 8.2e-45 177.6
Vvi13g462 ECH 145 253 AS2 family AT2G28500 73.4 1.1e-41 167.2
Vvi13g463 . 37 148 AS2 family AT2G28500 69.6 6.1e-40 161.4
Vvi13g468 ECH 136 243 AS2 family AT2G28500 67.6 1.8e-39 159.8
Vvi13g461 ECH 54 167 AS2 family AT2G28500 67.5 1.5e-38 156.8
Vvi13g465 . 46 157 AS2 family AT2G28500 65.2 7.5e-38 154.5
Vvi6g686 ECH 5 113 AS2 family AT2G28500 66.1 3.7e-37 152.1
Vvi13g101 ECH 5 113 AS2 family AT2G28500 66.1 4.8e-37 151.8
Vvi13g467 ECH 11 119 AS2 family AT2G28500 65.1 8.2e-37 151.0
Vvi19g1042 . 11 118 AS2 family AT2G28500 66.7 1.1e-36 150.6
Vvi13g460 . 8 197 AS2 family AT1G07900 56.3 2.5e-47 185.7
Vvi6g316 ECH 36 202 AS2 family AT1G07900 66.1 1.4e-45 179.9
Vvi6g318 ECH 36 201 AS2 family AT1G07900 65.1 1.5e-44 176.4
Vvi13g462 ECH 146 234 AS2 family AT1G07900 80.9 2.1e-38 156.0
Vvi13g468 ECH 122 227 AS2 family AT1G07900 66.0 4.0e-37 151.8
Vvi19g1042 . 1 169 AS2 family AT1G16530 56.1 2.0e-45 179.1
Vvi13g101 ECH 5 125 AS2 family AT1G16530 62.3 4.1e-38 154.8
Vvi6g686 ECH 5 110 AS2 family AT1G16530 68.2 1.2e-37 153.3
Vvi6g738 ECH 2 152 AS2 family AT2G30340 70.4 3.2e-56 215.7
Vvi13g134 ECH 1 153 AS2 family AT2G30340 68.7 9.2e-56 214.2
Vvi19g1042 . 9 128 AS2 family AT2G30340 60.8 2.3e-38 156.4
Vvi13g134 ECH 27 225 AS2 family AT2G40470 70.2 1.6e-68 256.1
Vvi6g738 ECH 29 224 AS2 family AT2G40470 62.1 3.5e-60 228.4
Vvi19g1042 . 9 147 AS2 family AT2G40470 57.0 1.6e-41 166.4
Vvi13g77 . 1 169 AS2 family AT3G11090 62.6 1.0e-52 203.4
Vvi7g530 . 1 135 AS2 family AT2G42440 72.1 1.8e-50 196.4
Vvi13g332 . 1 104 AS2 family AT2G42440 71.2 8.4e-40 161.0
Vvi7g531 . 3 143 AS2 family AT2G42440 58.2 4.2e-39 158.7
Vvi15g466 . 42 151 AS2 family AT2G42440 66.1 6.0e-38 154.8
Vvi15g467 . 1 133 AS2 family AT2G42440 56.6 3.9e-37 152.1
Vvi7g530 . 4 122 AS2 family AT3G58190 81.5 1.7e-52 203.0
Vvi7g531 . 3 128 AS2 family AT3G58190 65.4 6.5e-44 174.5
Vvi15g466 . 42 140 AS2 family AT3G58190 75.8 1.2e-40 163.7
Vvi13g332 . 5 104 AS2 family AT3G58190 75.0 2.6e-40 162.5
Vvi15g467 . 1 109 AS2 family AT3G58190 67.0 3.7e-39 158.7
Vvi8g116 . 30 138 AS2 family AT3G58190 66.1 5.9e-37 151.4
Vvi7g531 . 5 196 AS2 family AT2G42430 53.1 6.2e-51 198.0
Vvi7g530 . 3 121 AS2 family AT2G42430 71.4 2.4e-42 169.5
Vvi8g116 . 27 165 AS2 family AT2G42430 57.5 2.2e-40 162.9
Vvi15g466 . 42 144 AS2 family AT2G42430 72.8 5.5e-39 158.3
Vvi13g332 . 3 101 AS2 family AT2G42430 69.7 5.1e-37 151.8
Vvi15g466 . 42 256 AS2 family AT4G00220 58.6 1.2e-59 226.9
Vvi15g466 . 42 245 AS2 family AT2G45420 71.0 3.1e-72 268.9
Vvi15g467 . 11 116 AS2 family AT2G45420 75.5 6.4e-46 181.4
Vvi8g116 . 34 135 AS2 family AT2G45420 78.4 7.4e-42 167.9
Vvi7g531 . 8 111 AS2 family AT2G45420 76.9 9.6e-42 167.5
Vvi7g530 . 7 105 AS2 family AT2G45420 76.8 8.1e-41 164.5
Vvi13g332 . 8 110 AS2 family AT2G45420 68.0 9.9e-39 157.5
Vvi8g116 . 23 147 AS2 family AT3G03760 88.0 3.5e-55 212.2
Vvi15g466 . 42 143 AS2 family AT3G03760 79.4 9.4e-40 161.0
Vvi7g530 . 2 107 AS2 family AT3G03760 71.7 1.4e-38 157.1
Vvi7g531 . 7 121 AS2 family AT3G03760 67.8 3.9e-38 155.6
Vvi15g467 . 11 112 AS2 family AT3G03760 71.6 1.3e-36 150.6
Vvi15g467 . 1 192 AS2 family AT4G00210 54.8 9.2e-54 207.2
Vvi15g466 . 42 151 AS2 family AT4G00210 73.9 4.3e-43 171.8
Vvi7g530 . 2 109 AS2 family AT4G00210 67.6 3.2e-38 155.6
Vvi7g531 . 6 114 AS2 family AT4G00210 66.1 1.2e-37 153.7
Vvi8g116 . 34 135 AS2 family AT4G00210 71.6 4.6e-37 151.8
Vvi15g467 . 1 188 AS2 family AT2G45410 59.4 5.3e-58 221.1
Vvi8g116 . 34 135 AS2 family AT2G45410 69.6 1.0e-37 153.7
Vvi7g530 . 3 109 AS2 family AT2G45410 64.5 4.0e-37 151.8
Vvi7g531 . 8 110 AS2 family AT2G45410 68.0 6.8e-37 151.0
Vvi13g332 . 1 112 AS2 family AT5G06080 75.9 8.2e-45 177.2
Vvi7g530 . 1 123 AS2 family AT5G06080 61.1 6.3e-37 151.0
Vvi1g310 . 1 237 AS2 family AT1G68510 50.8 1.3e-58 223.4
Vvi17g327 ECH 1 163 AS2 family AT1G68510 62.4 1.9e-57 219.5
Vvi14g884 ECH 1 163 AS2 family AT1G68510 61.7 1.6e-56 216.5
Vvi1g309 ECH 1 236 AS2 family AT1G68510 50.6 1.4e-55 213.4
Vvi7g948 ECH 1 104 AS2 family AT1G68510 66.3 6.1e-40 161.4
Vvi18g662 ECH 1 115 AS2 family AT1G68510 58.1 2.8e-37 152.5
Vvi3g692 ECH 1 111 AS2 family AT1G68510 58.4 8.3e-37 151.0
Vvi14g884 ECH 1 164 AS2 family AT1G67100 72.5 5.0e-66 248.1
Vvi17g327 ECH 1 226 AS2 family AT1G67100 55.5 2.5e-65 245.7
Vvi1g310 . 1 134 AS2 family AT1G67100 75.7 3.8e-58 221.9
Vvi1g309 ECH 1 135 AS2 family AT1G67100 66.4 1.9e-49 193.0
Vvi7g948 ECH 1 104 AS2 family AT1G67100 73.1 3.1e-44 175.6
Vvi3g692 ECH 1 110 AS2 family AT1G67100 65.5 7.0e-44 174.5
Vvi18g662 ECH 1 110 AS2 family AT1G67100 60.9 1.6e-40 163.3
Vvi14g884 ECH 1 150 AS2 family AT3G02550 77.4 6.0e-68 254.6
Vvi1g310 . 1 149 AS2 family AT3G02550 73.5 4.9e-62 235.0
Vvi1g309 ECH 1 137 AS2 family AT3G02550 69.3 2.4e-53 206.1
Vvi3g692 ECH 1 104 AS2 family AT3G02550 67.3 2.6e-39 159.5
Vvi7g948 ECH 1 104 AS2 family AT3G02550 67.3 7.6e-39 157.9
Vvi18g662 ECH 1 110 AS2 family AT3G02550 60.0 5.5e-37 151.8
Vvi7g948 ECH 1 229 AS2 family AT5G67420 54.6 5.5e-63 238.0
Vvi18g662 ECH 1 137 AS2 family AT5G67420 68.5 8.0e-54 207.6
Vvi3g692 ECH 1 125 AS2 family AT5G67420 69.0 1.1e-50 197.2
Vvi14g884 ECH 3 115 AS2 family AT5G67420 62.1 1.4e-42 170.2
Vvi1g310 . 3 113 AS2 family AT5G67420 63.1 5.4e-42 168.3
Vvi17g327 ECH 3 112 AS2 family AT5G67420 62.7 2.9e-40 162.5
Vvi1g309 ECH 4 106 AS2 family AT5G67420 61.2 1.4e-37 153.7
Vvi7g948 ECH 1 227 AS2 family AT3G49940 57.6 2.6e-65 245.7
Vvi18g662 ECH 1 139 AS2 family AT3G49940 72.9 3.8e-56 215.3
Vvi3g692 ECH 1 125 AS2 family AT3G49940 73.4 5.7e-52 201.4
Vvi14g884 ECH 3 159 AS2 family AT3G49940 51.2 7.4e-44 174.5
Vvi1g310 . 3 113 AS2 family AT3G49940 65.8 2.4e-42 169.5
Vvi17g327 ECH 3 112 AS2 family AT3G49940 63.6 2.9e-40 162.5
Vvi7g948 ECH 1 229 AS2 family AT4G37540 58.2 1.5e-65 246.5
Vvi18g662 ECH 1 223 AS2 family AT4G37540 51.2 1.5e-54 209.9
Vvi3g692 ECH 1 115 AS2 family AT4G37540 76.5 2.0e-49 193.0
Vvi14g884 ECH 3 158 AS2 family AT4G37540 54.7 5.2e-42 168.3
Vvi1g310 . 3 112 AS2 family AT4G37540 62.7 7.0e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005042 3 0 2 3 2 1 2 1 1 1 1 1 2 2 1 2 1 0 2 2 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14064 PF03195 LOB 4.40E-38 No_clan Vvi TF