Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g470 ATGGAGGGAAGGGAAGGCATGACTTCAGGAGTTACAGTGATAGGAGCTGAAGCTCCATCCGACTATGAAATGGTGGCTAGAACTGAAAACCCTAGCCAGATTGCTGGATCACCAGCAGTGGATGCATCTCCTGTGAGTGTGGGATTCACAGGAACAGTGGGGAAGAAGAAGAGAGGTAGACCAAGGAAGTACCAACCAGATGGAATGGCTTCCATGACATTGTCTCCAATGCCGATTTCATCTTCAGCTCCACTATCTGGCAACTTCTCATCTGGAAAGCGGGGTAGAGGGCGGCCAGTTGGTTCCGAAAGCAAGCAAAAACAGAAAGTGGGGTCGGAGAATTCAGGCAACTGGTCTGCTATCTCTGATGGTGTAAATTTCACGCCTCATATCATCACTGTTAATGCTGGCGAGGATGTTACCATGAAGCTGATATCATTTTCTCAACAAGGACCTCGGGCTGTTTGTATCCTATCAGCTAATGGAGTGATTTCAAATGTTACACTTCGTCAGCAAGATTCTTCTGGGGGTACTTTGACTTATGAGGGTCGCTTTGAAATACTTTCTTTGACTGGATCATTTGTCCCTACTGAAAGCGGAGGAACAAGGAATCGAGCCGGTGGGATGAGTGTCTCTTTGGCAAGTCCAGATGGTCGGGTTGTTGGGGGAGGAGTTGCTGGACTTCTGATAGCCGCTAGTCCTGTTCTAGTTGTGGTTGGGAGTTTTCTACCAGACAATGCACCGGTACAGAAGCCAAAGAAGATGAAATCTGTTTCTGCACAAACTGCCACTCCAGTTTCTGTGCAAACCACCACCCCACCAGTCGTTACTAGTACACCAAAAGAGGAGGGTGTTGGTGGACAAGGGCAGCCCAGTTCTAGTGCCCTAAAGCCAGACATTGCTTCTCCCTCTTCCATCCAAAGAGAAAATTGGGCCAGTATGCAGTCCATGCAGGATTCGAGAAAGTCAGGAACAGATATCAACATATCTTTGCCTGGAGGTTAA 1005 47.96 MEGREGMTSGVTVIGAEAPSDYEMVARTENPSQIAGSPAVDASPVSVGFTGTVGKKKRGRPRKYQPDGMASMTLSPMPISSSAPLSGNFSSGKRGRGRPVGSESKQKQKVGSENSGNWSAISDGVNFTPHIITVNAGEDVTMKLISFSQQGPRAVCILSANGVISNVTLRQQDSSGGTLTYEGRFEILSLTGSFVPTESGGTRNRAGGMSVSLASPDGRVVGGGVAGLLIAASPVLVVVGSFLPDNAPVQKPKKMKSVSAQTATPVSVQTTTPPVVTSTPKEEGVGGQGQPSSSALKPDIASPSSIQRENWASMQSMQDSRKSGTDINISLPGG* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15034094 15043467 + Vvi15g470 Vvi15g470 777162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g470 334 MobiDBLite consensus disorder prediction 33 121 - -
Vvi15g470 334 MobiDBLite consensus disorder prediction 74 89 - -
Vvi15g470 334 SMART AT_hook_2 55 67 IPR017956 GO:0003677
Vvi15g470 334 SMART AT_hook_2 93 105 IPR017956 GO:0003677
Vvi15g470 334 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 333 - -
Vvi15g470 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 244 - -
Vvi15g470 334 MobiDBLite consensus disorder prediction 248 334 - -
Vvi15g470 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 333 IPR039605 GO:0003680
Vvi15g470 334 Gene3D - 129 259 - -
Vvi15g470 334 MobiDBLite consensus disorder prediction 255 327 - -
Vvi15g470 334 Pfam AT hook motif 55 66 IPR017956 GO:0003677
Vvi15g470 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Vvi15g470 334 ProSiteProfiles PPC domain profile profile. 124 263 IPR005175 -
Vvi15g470 334 MobiDBLite consensus disorder prediction 105 121 - -
Vvi15g470 334 CDD DUF296 128 242 IPR005175 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g470 - - vvi:100262627 616.305