Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g493 ATGAAACAGATAACCCTGCGAAGTGGGACCCACCACGTGTTATCATCGATTCAGAAACAAGAGGTTGAAGAAGAAGACGATACGAGAGCCGTTGATCTCAGAATTAACGGTGGAGAAAACGCGGAGTCAATTGATCACAAGAAAGACGACAACAGAGCTCCATCTTCAGACCCACCTTCGGCGGCGCAACCACAAGAACAACCAGTGGCGGCGGTTGCGGCGATTTCGTTGAAGGCAGAGCCTGATGCAGAGGAGAGGTCTCCGGCGGCACCGCCAGCTATGGGGGTGGTGCCGGTGGCCATGCCGATGCCGGTGCAAGTGCGGAGGCCGGCGCCTCCGGTAAAGAGGGCGTCGACGAAGGACCGGCACACGAAGGTAGAGGGACGCGGGCGGAGGATCCGAATGCCCGCGACATGCGCGGCCCGAATCTTCCAACTGACGCGAGAGCTCGGCCACAAATCAGACGGCGAAACCATTCGGTGGCTCCTAGAACACGCCGAGCCGGCAATAATCGCCGCCACCGGCACCGGCACAGTTCCAGCTATCGCCATGTCCGTCGGCGGGACCCTCAAGATCCCCACCACCTCAACCGCCACCACCCAAGAACCCGACCCCAACAAAAAGAAACGTAAACGACCTGCCAACAGTGAGTTCGTCGACGTTAACGATGCCGTTTCAGTCTCCTCCGGCCTTGCCCCAATCGCTACCCCGTTAGCTCCCCAAGGGCTCGTACCCATGTGGGCCATACCATCAAACGCCGTCGGCGCATTCTGGATGGTCCCGCCTACCACCGCCATTGCCGGGCCTTCGAACCAGCCTCAGATATGGACGTTTCCTCCAACTGCGACGCCTCTCATCAACATCTCCGCGAGACCCATTTCTTCTTTCGTCTCATCCATGCATCCTACAATCAACGTAGCCTCTGCAACAGCTTCAGCAGCTTCCACAATGCTAAGAGACTTCTCTCTGGAGATTTACGATAAACAAGAGCTTCAGTTCATGTCTCGCTCCTCAAAGCATTGA 1023 57.28 MKQITLRSGTHHVLSSIQKQEVEEEDDTRAVDLRINGGENAESIDHKKDDNRAPSSDPPSAAQPQEQPVAAVAAISLKAEPDAEERSPAAPPAMGVVPVAMPMPVQVRRPAPPVKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVGGTLKIPTTSTATTQEPDPNKKKRKRPANSEFVDVNDAVSVSSGLAPIATPLAPQGLVPMWAIPSNAVGAFWMVPPTTAIAGPSNQPQIWTFPPTATPLINISARPISSFVSSMHPTINVASATASAASTMLRDFSLEIYDKQELQFMSRSSKH* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15268030 15269562 + Vvi15g493 Vvi15g493 777185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g493 340 MobiDBLite consensus disorder prediction 109 129 - -
Vvi15g493 340 MobiDBLite consensus disorder prediction 114 129 - -
Vvi15g493 340 MobiDBLite consensus disorder prediction 193 215 - -
Vvi15g493 340 ProSiteProfiles TCP domain profile. 119 173 IPR017887 -
Vvi15g493 340 MobiDBLite consensus disorder prediction 1 69 - -
Vvi15g493 340 Pfam TCP family transcription factor 118 204 IPR017887 -
Vvi15g493 340 MobiDBLite consensus disorder prediction 1 16 - -
Vvi15g493 340 MobiDBLite consensus disorder prediction 17 54 - -
Vvi15g493 340 PANTHER TRANSCRIPTION FACTOR TCP9 50 340 - -
Vvi15g493 340 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 50 340 IPR005333 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g416 Vvi15g493 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14066 PF03634 TCP 3.00E-29 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g493 - - vvi:100245358 554.673