Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g502 ATGGTGAGAGGAAAGACTCAAATGAGGCGTATAGAAAACGCCACAAGTCGGCAAGTCACCTTTTCTAAGCGGAGGAATGGCCTCTTCAAGAAGGCCTTCGAGCTCTCCGTGCTCTGTGATGCTGAGGTTGCGCTCATCATTTTCTCTCCAAGAGGGAAGCTCTATGAATTTTCCAGTTCCAGTATGCAGGAGACAATAGAACGATATCAACGGCACACAAAAGATGTTCATACCAACAACTACAAGACTACCGAACATAACATGCAGCATTTGAAGCATGAAGCAGCAAATATGGCAAAGAAGATAGAGCTTCTTGAAATTTCCAAACGGAAACTCTTAGGAGAAGGTTTGGGGTCATGCTCCATTGAAGAACTACAACAGATAGAACAACAGTTGGAGCGCAGCGTAAGCAGCATCCGAGCAAGAAAGAATCAGGTTTTCAAGGAACAAATCGAGCAACTGAAAGAAAAGGAGAAAGCCCTAGCAGCTGAAAATGCAATGCTGTGTGAAAAGTGTGGGGTGCAACCGTATCAAGCTCCGAATCAAGAGAATGAAACTTTGCCTAGTGCAGAGAGAAGCCAAAATTCAGATGTCTCCACTGACTTGTTCATTGGACTGCCTGAGGGGAGAGCCAAGCGCCTCCTATTGGGAAACTGA 657 45.36 MVRGKTQMRRIENATSRQVTFSKRRNGLFKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSMQETIERYQRHTKDVHTNNYKTTEHNMQHLKHEAANMAKKIELLEISKRKLLGEGLGSCSIEELQQIEQQLERSVSSIRARKNQVFKEQIEQLKEKEKALAAENAMLCEKCGVQPYQAPNQENETLPSAERSQNSDVSTDLFIGLPEGRAKRLLLGN* 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15367160 15399138 + Vvi15g502 Vvi15g502 777194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g502 218 Coils Coil 122 142 - -
Vvi15g502 218 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi15g502 218 MobiDBLite consensus disorder prediction 180 199 - -
Vvi15g502 218 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Vvi15g502 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi15g502 218 PANTHER MADS-BOX PROTEIN SOC1 1 208 - -
Vvi15g502 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi15g502 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi15g502 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi15g502 218 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Vvi15g502 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi15g502 218 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
Vvi15g502 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi15g502 218 Coils Coil 144 171 - -
Vvi15g502 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi15g502 218 PANTHER MADS BOX PROTEIN 1 208 - -
Vvi15g502 218 Coils Coil 81 108 - -
Vvi15g502 218 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g422 Vvi15g502 ECH
Vvi15g502 Vvi16g545 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14067 PF01486 K-box 2.70E-29 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g502 - - vvi:100232995 397.127