Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g504 ATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATCAACCGTCAAGTTACCTTCTCCAAACGCAGAAATGGTCTGCTCAAGAAGGCCTATGAACTTTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAGCCGCGGCAAGCTCTATGAGTTTGGCAGTGCTGGTACTACCAAAACCCTAGAGCGGTATCAACGCGTCTGCTACACTCCTCAAGACAACAATATGGAATGTGAAACACAGAGTTGGTACCAAGAGGTGTCAAAGTTAAAGGCAAAATATGAATCTCTCCAGCGCACCCAAAGGCATTTGCTTGGAGAAGATCTTGGACCGCTGAGTGTCAAAGAACTGCAAAATCTTGAGAAACAGCTTGAAGGAGCTCTAGCACAAGCTAGGCAAAGGAAGACCCAAATGATGATAGAACAAATGGAAGACCTTCGCAGGAAGGAGCGACAGCTTGGGGATCTAAACAAACAGCTCAAACTTAAGCTTGAGGCCGAGGGACAAAGTCTTAAAGCCATTCAAGGTTCATGGAACCCCAGTACTGCAACTGCTGGAAACAGCAGCTTCCCTGTGCATCCTTCCCAATCTAACCCAATGGACTGCGAACCCGAACCCATCTTGCAAATTGGGTACCATCACTATGTTCCAGCAGAAGGGCCGTCTGTTTCAAAGAGCATGGCTGGTGAGAGCAACTTCATCCAAGGGTGGGTTCTTTGA 735 47.62 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTKTLERYQRVCYTPQDNNMECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQARQRKTQMMIEQMEDLRRKERQLGDLNKQLKLKLEAEGQSLKAIQGSWNPSTATAGNSSFPVHPSQSNPMDCEPEPILQIGYHHYVPAEGPSVSKSMAGESNFIQGWVL* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15406739 15424492 - Vvi15g504 Vvi15g504 777196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g504 244 MobiDBLite consensus disorder prediction 180 201 - -
Vvi15g504 244 MobiDBLite consensus disorder prediction 180 206 - -
Vvi15g504 244 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi15g504 244 PANTHER MADS BOX PROTEIN 1 229 - -
Vvi15g504 244 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Vvi15g504 244 Coils Coil 119 171 - -
Vvi15g504 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi15g504 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi15g504 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi15g504 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi15g504 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi15g504 244 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Vvi15g504 244 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Vvi15g504 244 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi15g504 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi15g504 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi15g504 244 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 229 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g422 Vvi15g504 ECH
Vvi15g504 Vvi16g549 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14068 PF01486 K-box 1.90E-30 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g504 K09264 - vvi:100232868 489.96